View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3856_low_42 (Length: 317)
Name: NF3856_low_42
Description: NF3856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3856_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 8e-89; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 11 - 217
Target Start/End: Complemental strand, 3950229 - 3950023
Alignment:
| Q |
11 |
cacagaactttgaaataaaaatcatttaatnnnnnnntttcatcaaaattaacacaaaactcaattagtactattattttcttaccacgagtttgtaaag |
110 |
Q |
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| T |
3950229 |
cacagaactttgcaataaaaatcatttaagagaaaaaattcatcaaaattaacacaaaactcaattagtactattattttcttaccacgagcttgtaaag |
3950130 |
T |
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| Q |
111 |
tttagcttaacttacaataccgatattgataggttggacctctttacctgtgttccaacccgagacctcggagttatgggtgtgagttttatgttgtatt |
210 |
Q |
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| T |
3950129 |
tttagcttaactgacaataccgatattgataggttggacctctttacctgtgttccaacccgagacctcggagttatgggtgtgagttttatgttgtatt |
3950030 |
T |
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| Q |
211 |
tgtgact |
217 |
Q |
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||||||| |
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| T |
3950029 |
tgtgact |
3950023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 259 - 302
Target Start/End: Complemental strand, 3950021 - 3949978
Alignment:
| Q |
259 |
tttccttaactatgaatttggtgtaattgtaaatatgatgttta |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3950021 |
tttccttaactatgaatttggtgtaattgtaaatatgatgttta |
3949978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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