View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3856_low_44 (Length: 308)
Name: NF3856_low_44
Description: NF3856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3856_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 49213443 - 49213740
Alignment:
| Q |
1 |
ttctatctttttatgtcctttgatgacttcgattgtatatgccggtcacctgccttgttcttctttcttcttggcgcactcaccctcggttccaccaatg |
100 |
Q |
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| T |
49213443 |
ttctatctttttatgtcctttgatgacttcgattgtatatgccggtcacctgccttgttcttctttctccttggcgcactcaccctcggttccaccaatg |
49213542 |
T |
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| Q |
101 |
ggccggaccaggtctgaatatttggtttatgatatgagaagtctgtggaactaaatggaacatcaggaggatcaaaaactggattcatatgacatgaaga |
200 |
Q |
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| T |
49213543 |
ggccggaccaggtctgaatatttggtttatgatatgagaagtctgtggaactaaatggaacatcaggaggatcaaaaactggattcatatgacatgaaga |
49213642 |
T |
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| Q |
201 |
accaaaaggatagcctaaagttccatcttgatgtggaggaggaaacttctcacttttacttttagcattagtgcgcgttaccagtctccatctctgtg |
298 |
Q |
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| T |
49213643 |
accaaaaggatagcctaaagttccatcttgatgtggaggaggaaacttctcacttttactcttagcattagcgcgcgttaccagtctccatctctgtg |
49213740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 139 - 269
Target Start/End: Complemental strand, 6703926 - 6703796
Alignment:
| Q |
139 |
aagtctgtggaactaaatggaacatcaggaggatcaaaaactggattcatatgacatgaagaaccaaaaggatagcctaaagttccatcttgatgtggag |
238 |
Q |
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|||| ||||||||| ||||||||||| | || ||| |||||||||| ||| || ||||||||| ||||||||||||| | ||| ||||| || |||| |
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| T |
6703926 |
aagtttgtggaactgaatggaacatcggaagcatcgaaaactggatccatgtgttgtgaagaacccaaaggatagcctagatctccgtcttggtggggag |
6703827 |
T |
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| Q |
239 |
gaggaaacttctcacttttacttttagcatt |
269 |
Q |
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| T |
6703826 |
gaggaaatttctcactcttgctcttagcatt |
6703796 |
T |
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