View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3856_low_5 (Length: 697)
Name: NF3856_low_5
Description: NF3856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3856_low_5 |
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| [»] scaffold0042 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 294 - 689
Target Start/End: Complemental strand, 41249121 - 41248731
Alignment:
| Q |
294 |
ggagcaactttgattggttgaattgtgtttcgtgactgatcacttcgagaagcttttcctcgagatatatagcagtgttggaaaaggggggccaaattgt |
393 |
Q |
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| T |
41249121 |
ggagcaactttgattggttgaattgtgtttcgtgactgatcacttcgagaagcttttcctcgagatatatagcagtgctggaaaaggggggccaaattgt |
41249022 |
T |
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| Q |
394 |
agcctatgcgaaacaaatttaagtccccactcttaatttgggtgttgtagtgctcaactttcaaaaggagttttctatatttttctcaatttgtacattt |
493 |
Q |
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| T |
41249021 |
agcctatgcgaaacaaatttaagtccccactcttaatttgggtgttgtagtgctcaactttcaaaaggagttttctatatttttctcaatttgtacattt |
41248922 |
T |
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| Q |
494 |
gtgatttaggtgtaactacaacaaacttatattcggtggcatttttctcacttgcttctgtatttttctctaattcatggctaccatttaccatctcaaa |
593 |
Q |
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| T |
41248921 |
gtgatttaggtgtaactacaacaaacttatattcggtggcatttttctcacttgcgactgtatttttctctaattcatggctaccatttaccatctcaaa |
41248822 |
T |
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| Q |
594 |
cttaatagaaggatcgtctttttgatttgacgggagacaacagccttgtaatgttgttccatcttgacgatggcgtgaccgatttaaaagtataat |
689 |
Q |
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| T |
41248821 |
ctt-----aaggatcgtgtttttaatttgacgggagacaacagccttgtaatgttgttccatcttgacgatggcgtgaccgatttaaaagtataat |
41248731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 19 - 209
Target Start/End: Complemental strand, 41249478 - 41249298
Alignment:
| Q |
19 |
caaaacgagtctgccttagagtttatagtgatatatttaatttggtctaacaataacaagtttgtttgtgttcctgtatcatttcatttctgagtaagag |
118 |
Q |
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| T |
41249478 |
caaaacgagtctgccttagagtttatagtgatatattt-----ggtctaacaataacaagtttgtttgtgttcctgtatcatttc-----tgagtaagag |
41249389 |
T |
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| Q |
119 |
tttcacgttggatacaatagtggatgttgagcattttaacttatgtcttaggttttggataaagatgttgtgttcaattcatttgtgtgat |
209 |
Q |
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| T |
41249388 |
tttcacattggatacaaaagtggatgttgagcattttaacttatgtgttaggttttggataaagttgttgtgttcaactcacttgtgtgat |
41249298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 211 - 269
Target Start/End: Complemental strand, 41249203 - 41249145
Alignment:
| Q |
211 |
gcttaaacgagttggcagcataacatcccttagattttacatttatttgatgaactgct |
269 |
Q |
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| T |
41249203 |
gcttaaacgagttggcagcataacatcccttagattttacatttatttgatgaactgct |
41249145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 221 - 261
Target Start/End: Original strand, 89979 - 90019
Alignment:
| Q |
221 |
gttggcagcataacatcccttagattttacatttatttgat |
261 |
Q |
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| T |
89979 |
gttggtagcataacataccttagattttacatttatttgat |
90019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 269
Target Start/End: Original strand, 34482473 - 34482516
Alignment:
| Q |
226 |
cagcataacatcccttagattttacatttatttgatgaactgct |
269 |
Q |
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| T |
34482473 |
cagcataacatcctttagatttcacatttatttgatggactgct |
34482516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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