View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3856_low_59 (Length: 253)

Name: NF3856_low_59
Description: NF3856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3856_low_59
NF3856_low_59
[»] chr7 (12 HSPs)
chr7 (1-251)||(15424121-15424384)
chr7 (1-251)||(15513773-15514041)
chr7 (121-251)||(15481998-15482127)
chr7 (6-251)||(15451608-15451870)
chr7 (123-179)||(18373332-18373388)
chr7 (123-173)||(15426382-15426432)
chr7 (3-173)||(15858051-15858240)
chr7 (3-72)||(15426243-15426317)
chr7 (4-184)||(15465868-15466064)
chr7 (3-119)||(15482144-15482264)
chr7 (121-184)||(15533742-15533805)
chr7 (200-232)||(15465821-15465853)
[»] scaffold0957 (1 HSPs)
scaffold0957 (3-251)||(456-722)
[»] scaffold1195 (3 HSPs)
scaffold1195 (121-189)||(354-422)
scaffold1195 (3-70)||(218-290)
scaffold1195 (203-231)||(437-465)


Alignment Details
Target: chr7 (Bit Score: 126; Significance: 4e-65; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 15424121 - 15424384
Alignment:
Q  1 tgatgcacttgtagcatgtacaatttcttggtaacgttcatcattatttatttctacagaattagggtttcgnnnnnnnaaagagttgtttcatcataaa 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||| |||||||    
T  15424121 tgatgcacttgtatcatgtacaatttcttggtaacgttcatcattatttatttctacagaattagggtttcg-ttttttaaagagttgtttcttcataaa 15424219  T
Q  101 aattgaaaattcaagacgcg---------------tcgaaactttggtaacattcatgtgtttaaatttgattttagactggaatcttagaaactaagtg 185  Q
    |||||| ||||||||| |||               ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||     
T  15424220 aattgataattcaagatgcgtactgcgttatttaatcgaaactttggtaacattcatgtgtttaaatttgattttagactggaatcttggaaaccaagtt 15424319  T
Q  186 atgaacnnnnnnnnatcttttgggagcaataggattactctcccttatagcatccctatacctttg 251  Q
    ||| |         ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15424320 atg-atattttattatcttttgggagcaataggattactctcccttatagcatccctatacctttg 15424384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 15513773 - 15514041
Alignment:
Q  1 tgatgcacttgtagcatgtacaatttcttggtaacgttcatcattatttatttctacagaattagggtttcgnnnnnnnaaagagttgtttcatcataaa 100  Q
    ||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||       ||||||||||||| |||||||    
T  15513773 tgatgcacttgtatcatgtacaatttcttggtaaatttcatcattatttatttctacagaattagggtttcg-ttttttaaagagttgtttcttcataaa 15513871  T
Q  101 aattgaaaattcaagacgc---------------gtcgaaactttggtaacattcatgtgtttaaatttgattttagactggaatcttagaaactaagtg 185  Q
    |||||| ||||||||||||                |||| ||||||||||||||||||||||| |||||||||||||| ||||||||| ||||| ||||     
T  15513872 aattgataattcaagacgcctactacgttatttaatcgacactttggtaacattcatgtgtttgaatttgattttagattggaatcttggaaaccaagtt 15513971  T
Q  186 atga----acnnnnnnnnatcttttgggagcaataggattactctcccttatagcatccctatacctttg 251  Q
    ||||              ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15513972 atgactatttttttttttatcttttgggagcaataggattactctcccttatagcatccctatacctttg 15514041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 121 - 251
Target Start/End: Complemental strand, 15482127 - 15481998
Alignment:
Q  121 tcgaaactttggtaacattcatgtgtttaaatttgattttagactggaatcttagaaactaagtgatgaacnnnnnnnnatcttttgggagcaataggat 220  Q
    ||||||||||||||| |||||||||||| |||||||||||||| ||||||||| ||| | ||||  | |||        |||||||||||||||||||||    
T  15482127 tcgaaactttggtaatattcatgtgtttgaatttgattttagagtggaatcttggaagccaagttgt-aacttttttttatcttttgggagcaataggat 15482029  T
Q  221 tactctcccttatagcatccctatacctttg 251  Q
    ||||||||||||||| |||||||||||||||    
T  15482028 tactctcccttatagtatccctatacctttg 15481998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 251
Target Start/End: Complemental strand, 15451870 - 15451608
Alignment:
Q  6 cacttgtagcatgtacaatttcttggtaa----cgttcatcattatttatttctacagaattagggtttcgnnnnnnnaaagagttgtttcatcataaaa 101  Q
    |||||||| ||||||||||||||||||||    | |||||||||||||||||||| |||||||||||||||       ||||||||||||| | || |||    
T  15451870 cacttgtatcatgtacaatttcttggtaaaagacattcatcattatttatttctatagaattagggtttcgtttttt-aaagagttgtttctttatgaaa 15451772  T
Q  102 attgaaaattcaagacgcgt---------------cgaaactttggtaacattcatgtgtttaaatttgattttagactggaatcttagaaactaagtga 186  Q
     |||| ||||||||| || |               |||||||||| |||||||||||||||| |||||||||||||| ||||||||| ||||| || |      
T  15451771 gttgataattcaagatgcatactttgttattaaatcgaaactttgataacattcatgtgtttgaatttgattttagattggaatcttggaaaccaaattg 15451672  T
Q  187 tgaacnnnnnnnnatcttttgggagcaataggattactctcccttatagcatccctatacctttg 251  Q
    || ||        |||||||||||||||||||| ||||||  |||||||||| |||||| |||||    
T  15451671 tg-acctttttttatcttttgggagcaataggagtactctatcttatagcattcctatatctttg 15451608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 18373332 - 18373388
Alignment:
Q  123 gaaactttggtaacattcatgtgtttaaatttgattttagactggaatcttagaaac 179  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||| |||||    
T  18373332 gaaactttggtaacattcatgtgttcgaatttgattttagactggaatctttgaaac 18373388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 15426382 - 15426432
Alignment:
Q  123 gaaactttggtaacattcatgtgtttaaatttgattttagactggaatctt 173  Q
    |||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  15426382 gaaactttggtaacattcatgtgtttgaatttgattttagagtggaatctt 15426432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 173
Target Start/End: Complemental strand, 15858240 - 15858051
Alignment:
Q  3 atgcacttgtagcatgtacaatttcttggtaacgt-----tcatcattatttatttctacagaattagggtttcgnnnnnnnaaagagttgtttcatcat 97  Q
    ||||| ||||| |||||||||||||||||||||       ||||||||||||||||| | |||||||||||||||       ||||||||||||| | ||    
T  15858240 atgcaattgtatcatgtacaatttcttggtaacaggacagtcatcattatttatttcaatagaattagggtttcgtttatt-aaagagttgtttctttat 15858142  T
Q  98 aaaaattgaaaattcaagacgcgt---------------cgaaactttggtaacattcatgtgtttaaatttgattttagactggaatctt 173  Q
    ||||||||| ||||||||||||||               | |||||||| |||||||||||||||| |||||||||||||| |||||||||    
T  15858141 aaaaattgataattcaagacgcgtattatgttatttagtccaaactttgataacattcatgtgtttgaatttgattttagagtggaatctt 15858051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 15426243 - 15426317
Alignment:
Q  3 atgcacttgtagcatgtacaatttcttggtaacgt-----tcatcattatttatttctacagaattagggtttcg 72  Q
    ||||||||||| ||||||||||||||||||||| |     ||||||||||||||||| | |||||||||||||||    
T  15426243 atgcacttgtatcatgtacaatttcttggtaacatgacagtcatcattatttatttcaatagaattagggtttcg 15426317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 184
Target Start/End: Complemental strand, 15466064 - 15465868
Alignment:
Q  4 tgcacttgtagcatgtacaatttcttggtaacg-----ttcatcattatttatttctacagaattagggtttcgnnnnnnnaaagagttgtttcatcata 98  Q
    |||||||||| |||||||||||||||||||||      |||||||||||||||||| | |||||||||||||||       ||||||||||||| | ||     
T  15466064 tgcacttgtatcatgtacaatttcttggtaacaagacattcatcattatttatttcaatagaattagggtttcgtttttt-aaagagttgtttctttatg 15465966  T
Q  99 aaaattgaaaattcaagacgcgt---------------cgaaactttggtaacattcatgtgtttaaatttgattttagactggaatcttagaaactaag 183  Q
    |||||||| |||||||| ||| |               |||||||||||||||||||||||||||    ||||||||||||||||||||| ||||| |||    
T  15465965 aaaattgataattcaagtcgcatactatgttatttaatcgaaactttggtaacattcatgtgttt---gttgattttagactggaatcttggaaaccaag 15465869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 119
Target Start/End: Complemental strand, 15482264 - 15482144
Alignment:
Q  3 atgcacttgtagcatgtacaatttcttggta-----acgttcatcattatttatttctacagaattagggtttcgnnnnnnnaaagagttgtttcatcat 97  Q
    ||||||||||| |||||||||||||||||||     ||  ||||||||||||||||| | |||||||||||||||       ||||||||||||| | ||    
T  15482264 atgcacttgtatcatgtacaatttcttggtaacaggacagtcatcattatttatttcaatagaattagggtttcg-tttattaaagagttgtttctttat 15482166  T
Q  98 aaaaattgaaaattcaagacgc 119  Q
     |||||||| |||| |||||||    
T  15482165 gaaaattgataatttaagacgc 15482144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 184
Target Start/End: Original strand, 15533742 - 15533805
Alignment:
Q  121 tcgaaactttggtaacattcatgtgtttaaatttgattttagactggaatcttagaaactaagt 184  Q
    ||||||||||| |||| ||||||| ||| ||||| |||||||| ||||||||| ||||| ||||    
T  15533742 tcgaaactttgataactttcatgtatttgaatttaattttagattggaatcttggaaaccaagt 15533805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 232
Target Start/End: Complemental strand, 15465853 - 15465821
Alignment:
Q  200 atcttttgggagcaataggattactctccctta 232  Q
    ||||||||||| |||||||||||||||||||||    
T  15465853 atcttttgggatcaataggattactctccctta 15465821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0957 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0957
Description:

Target: scaffold0957; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 3 - 251
Target Start/End: Complemental strand, 722 - 456
Alignment:
Q  3 atgcacttgtagcatgtacaatttcttggtaacgt-----tcatcattatttatttctacagaattagggtttcgnnnnnnnaaagagttgtttcatcat 97  Q
    ||||| ||||| |||||||||||||||||||||       ||||||||||||||||| | |||||||||||||||       ||||||||||||| ||||    
T  722 atgcatttgtatcatgtacaatttcttggtaacaggacagtcatcattatttatttcaatagaattagggtttcgtttttt-aaagagttgtttcttcat 624  T
Q  98 aaaaattgaaaattcaagacgcgtc---------------gaaactttggtaacattcatgtgtttaaatttgattttagactggaatcttagaaactaa 182  Q
    ||||||||| ||||||||| |||||               ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||    
T  623 aaaaattgataattcaagatgcgtcttacgtcatttaatcgaaactttggtaacattcatgtgtttaaatttgattttagattggaatcttggaaacgaa 524  T
Q  183 gtgatgaacnnnnnnnnatcttttgggagcaataggattactctcccttatagcatccctatacctttg 251  Q
    || ||| ||        ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  523 gttatg-acatttttttatcttttgggagcaataggattactctcccttatagcatccctatacctttg 456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1195 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: scaffold1195
Description:

Target: scaffold1195; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 121 - 189
Target Start/End: Original strand, 354 - 422
Alignment:
Q  121 tcgaaactttggtaacattcatgtgtttaaatttgattttagactggaatcttagaaactaagtgatga 189  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||| |||| ||||    
T  354 tcgaaactttggtaacattcatgtgtttgaatttgattttagagtggaatcttggaaaccaagttatga 422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1195; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 218 - 290
Alignment:
Q  3 atgcacttgtagcatgtacaatttcttggtaacgt-----tcatcattatttatttctacagaattagggttt 70  Q
    ||||||||||| |||||||||| ||||||||||       ||||||||||||||||| |||||||||||||||    
T  218 atgcacttgtatcatgtacaatatcttggtaacaggacagtcatcattatttatttcaacagaattagggttt 290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1195; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 231
Target Start/End: Original strand, 437 - 465
Alignment:
Q  203 ttttgggagcaataggattactctccctt 231  Q
    |||||||||||||||||||||||||||||    
T  437 ttttgggagcaataggattactctccctt 465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University