View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3856_low_62 (Length: 250)
Name: NF3856_low_62
Description: NF3856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3856_low_62 |
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| [»] scaffold0957 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 2 - 241
Target Start/End: Original strand, 15514004 - 15514243
Alignment:
| Q |
2 |
ataggattattctcccttatagcattcctatatctttggaaccataggatcgacacctaaacaataatgttattgttaggtccctttccaattaaaggtg |
101 |
Q |
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| T |
15514004 |
ataggattactctcccttatagcatccctatacctttgaaaccataggatcgacacctaaacaataatgttattgttaggtccctttccaagtaaaggtg |
15514103 |
T |
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| Q |
102 |
ttggtagtattggtatattttaccatgtctattcaaatttataattccctcatttaatatttttagtttccctttagggtccttttcccttagaaattag |
201 |
Q |
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| T |
15514104 |
ttggtagtattagtatattttaccatgtctattcaaatttataattccctcgtttaatatttttagtttcccttttgggtctttttcccttaagaattag |
15514203 |
T |
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| Q |
202 |
aggatcaatacccaaaatataatgttattgttccctttgc |
241 |
Q |
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| T |
15514204 |
aggatcaatacccaaaatataatgttattgttccctttgc |
15514243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 57 - 241
Target Start/End: Complemental strand, 15858010 - 15857829
Alignment:
| Q |
57 |
cctaaacaataatgttattgttaggtccctttccaattaaaggtgttggtagtattggtatattttaccatgtctattcaaatttataattccctcattt |
156 |
Q |
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|||| |||||||| ||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
15858010 |
cctatacaataatattattgttaggtccctttccaatcaaaggtgttggtatta---gtatattttaccatgtctattcaaatttataattccctcgttt |
15857914 |
T |
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| Q |
157 |
aatatttttagtttccctttagggtccttttcccttagaaattagaggatcaatacccaaaatataatgttattgttccctttgc |
241 |
Q |
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| T |
15857913 |
aatatttttagttttcctttagggtctttttcccttaggaattagaggatcaatacccaaattataatgttattgttccctttgc |
15857829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 17 - 157
Target Start/End: Complemental strand, 15451630 - 15451490
Alignment:
| Q |
17 |
cttatagcattcctatatctttggaaccataggatcgacacctaaacaataatgttattgttaggtccctttccaattaaaggtgttggtagtattggta |
116 |
Q |
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| T |
15451630 |
cttatagcattcctatatctttggaaccataggatcgacacctaaacaataatgttattgttaggtccctttccaataaaaggtgttggtagtattagta |
15451531 |
T |
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| Q |
117 |
tattttaccatgtctattcaaatttataattccctcattta |
157 |
Q |
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| T |
15451530 |
tattttaccacgtcaattcaaatttataattccctcattta |
15451490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 2 - 129
Target Start/End: Original strand, 15424347 - 15424474
Alignment:
| Q |
2 |
ataggattattctcccttatagcattcctatatctttggaaccataggatcgacacctaaacaataatgttattgttaggtccctttccaattaaaggtg |
101 |
Q |
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| T |
15424347 |
ataggattactctcccttatagcatccctatacctttggaaccatgggatcgacacctaaacaataatgctattgttaggtccctttccaattaaaggtg |
15424446 |
T |
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| Q |
102 |
ttggtagtattggtatattttaccatgt |
129 |
Q |
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| T |
15424447 |
ttggtagtattagtatattttaccatgt |
15424474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 46 - 143
Target Start/End: Complemental strand, 15465822 - 15465725
Alignment:
| Q |
46 |
taggatcgacacctaaacaataatgttattgttaggtccctttccaattaaaggtgttggtagtattggtatattttaccatgtctattcaaatttat |
143 |
Q |
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| T |
15465822 |
taggatcgacacctaaacaataatgttattgttaggtccctttcggataaaaggtgttggtagtattggtatagtttaccacgtcaattcaaatttat |
15465725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 162 - 241
Target Start/End: Original strand, 15426626 - 15426705
Alignment:
| Q |
162 |
ttttagtttccctttagggtccttttcccttagaaattagaggatcaatacccaaaatataatgttattgttccctttgc |
241 |
Q |
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| T |
15426626 |
ttttagtttccctttagggtatttttaacttaggaattagaggatcaatacccaaaatataatgttattgttccctttgc |
15426705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 36 - 122
Target Start/End: Original strand, 15426463 - 15426549
Alignment:
| Q |
36 |
tttggaaccataggatcgacacctaaacaataatgttattgttaggtccctttccaattaaaggtgttggtagtattggtatatttt |
122 |
Q |
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| T |
15426463 |
tttgggaccataggatcgtcacctaaacaataatgatatttctaggtccctttccaataaaaggtgttggtagtattagtatatttt |
15426549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 164 - 241
Target Start/End: Complemental strand, 15465680 - 15465599
Alignment:
| Q |
164 |
ttagtttccctttagggtccttttcccttagaaattagaggatc----aatacccaaaatataatgttattgttccctttgc |
241 |
Q |
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| T |
15465680 |
ttagtttccctttagggtctctttcccttaggaattagaggatcaattaataccaaaaatataatgttattgttccctttgc |
15465599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0957 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0957
Description:
Target: scaffold0957; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 493 - 436
Alignment:
| Q |
2 |
ataggattattctcccttatagcattcctatatctttggaaccataggatcgacacct |
59 |
Q |
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| T |
493 |
ataggattactctcccttatagcatccctatacctttggaaccataggatcgtcacct |
436 |
T |
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