View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3856_low_64 (Length: 249)

Name: NF3856_low_64
Description: NF3856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3856_low_64
NF3856_low_64
[»] chr3 (20 HSPs)
chr3 (30-249)||(14006720-14006927)
chr3 (24-115)||(16148876-16148968)
chr3 (42-104)||(12474187-12474249)
chr3 (42-104)||(14882683-14882745)
chr3 (202-249)||(16031701-16031749)
chr3 (201-240)||(11067442-11067481)
chr3 (201-249)||(2025293-2025342)
chr3 (201-249)||(4433164-4433213)
chr3 (201-249)||(15848300-15848349)
chr3 (201-249)||(17910788-17910837)
chr3 (201-249)||(17960805-17960854)
chr3 (201-249)||(19888136-19888185)
chr3 (201-249)||(21735576-21735625)
chr3 (201-249)||(22150404-22150453)
chr3 (201-249)||(28165380-28165429)
chr3 (198-249)||(4403674-4403726)
chr3 (201-249)||(11073624-11073672)
chr3 (201-249)||(13698556-13698604)
chr3 (199-246)||(15663523-15663571)
chr3 (201-249)||(15902393-15902441)
[»] scaffold0525 (1 HSPs)
scaffold0525 (201-249)||(7054-7102)
[»] scaffold0009 (2 HSPs)
scaffold0009 (201-249)||(83494-83542)
scaffold0009 (48-97)||(156167-156216)
[»] chr8 (9 HSPs)
chr8 (201-249)||(9767964-9768012)
chr8 (202-249)||(20310933-20310979)
chr8 (202-249)||(21097566-21097612)
chr8 (201-249)||(26735794-26735844)
chr8 (203-240)||(30213559-30213596)
chr8 (201-249)||(30422342-30422391)
chr8 (201-249)||(40213983-40214032)
chr8 (201-249)||(45539396-45539445)
chr8 (201-249)||(22672968-22673016)
[»] chr7 (14 HSPs)
chr7 (201-249)||(8932954-8933002)
chr7 (42-104)||(18158664-18158726)
chr7 (201-249)||(4412882-4412930)
chr7 (199-249)||(13259357-13259408)
chr7 (199-249)||(14746533-14746584)
chr7 (199-249)||(24883257-24883308)
chr7 (200-249)||(4433454-4433504)
chr7 (201-249)||(1559957-1560006)
chr7 (201-249)||(6045144-6045193)
chr7 (195-249)||(11087955-11088011)
chr7 (201-249)||(13027865-13027914)
chr7 (201-249)||(18440584-18440633)
chr7 (201-249)||(8182153-8182201)
chr7 (201-240)||(11030295-11030335)
[»] chr5 (11 HSPs)
chr5 (201-249)||(90327-90375)
chr5 (201-249)||(2157162-2157211)
chr5 (201-249)||(17446005-17446054)
chr5 (200-249)||(35544003-35544054)
chr5 (200-249)||(21702432-21702482)
chr5 (199-249)||(30742133-30742183)
chr5 (201-249)||(3246354-3246403)
chr5 (201-249)||(13533176-13533225)
chr5 (201-249)||(17456621-17456670)
chr5 (201-249)||(40033674-40033723)
chr5 (201-249)||(26120712-26120760)
[»] chr4 (10 HSPs)
chr4 (197-249)||(55650742-55650796)
chr4 (201-249)||(49002767-49002816)
chr4 (201-249)||(19241402-19241452)
chr4 (201-249)||(11514459-11514508)
chr4 (201-249)||(14836890-14836939)
chr4 (201-249)||(19570440-19570489)
chr4 (201-249)||(22190038-22190087)
chr4 (201-249)||(31267578-31267627)
chr4 (201-249)||(33377563-33377612)
chr4 (201-249)||(22089478-22089526)
[»] chr6 (17 HSPs)
chr6 (42-104)||(20454123-20454185)
chr6 (201-249)||(31930802-31930851)
chr6 (201-249)||(33353151-33353199)
chr6 (199-249)||(16124327-16124378)
chr6 (201-249)||(20634879-20634929)
chr6 (200-249)||(19833893-19833943)
chr6 (201-249)||(12347282-12347333)
chr6 (201-249)||(12352932-12352981)
chr6 (201-249)||(17446544-17446593)
chr6 (201-249)||(19453461-19453510)
chr6 (201-249)||(27720721-27720772)
chr6 (201-249)||(28252357-28252406)
chr6 (201-249)||(32756756-32756805)
chr6 (201-249)||(33866498-33866547)
chr6 (200-249)||(10631330-10631381)
chr6 (200-249)||(15532535-15532586)
chr6 (201-249)||(22801339-22801387)
[»] chr1 (11 HSPs)
chr1 (200-249)||(14388955-14389005)
chr1 (196-249)||(51657277-51657331)
chr1 (201-249)||(46181681-46181730)
chr1 (199-249)||(19037163-19037214)
chr1 (201-249)||(34256353-34256403)
chr1 (62-104)||(1960788-1960830)
chr1 (199-249)||(12283588-12283638)
chr1 (199-249)||(16233954-16234004)
chr1 (76-145)||(6198953-6199022)
chr1 (201-249)||(19171199-19171248)
chr1 (201-249)||(22202716-22202764)
[»] scaffold0859 (1 HSPs)
scaffold0859 (201-249)||(2166-2215)
[»] scaffold0582 (1 HSPs)
scaffold0582 (25-93)||(2388-2456)
[»] scaffold0570 (1 HSPs)
scaffold0570 (201-249)||(313-363)
[»] scaffold0349 (1 HSPs)
scaffold0349 (201-249)||(10140-10190)
[»] scaffold0084 (1 HSPs)
scaffold0084 (201-249)||(57606-57656)
[»] chr2 (12 HSPs)
chr2 (199-249)||(1041526-1041577)
chr2 (201-249)||(19313793-19313843)
chr2 (201-249)||(20319512-20319562)
chr2 (201-249)||(22773734-22773784)
chr2 (199-249)||(28732704-28732755)
chr2 (199-249)||(41122534-41122585)
chr2 (62-104)||(24695332-24695374)
chr2 (201-249)||(24450307-24450356)
chr2 (201-249)||(24851528-24851577)
chr2 (201-249)||(28702080-28702129)
chr2 (201-249)||(45087853-45087902)
chr2 (42-97)||(40388017-40388073)
[»] scaffold0391 (1 HSPs)
scaffold0391 (200-249)||(3042-3092)
[»] scaffold0068 (1 HSPs)
scaffold0068 (200-249)||(11428-11478)
[»] scaffold0035 (1 HSPs)
scaffold0035 (199-249)||(28974-29024)
[»] scaffold0011 (1 HSPs)
scaffold0011 (199-240)||(250843-250885)
[»] scaffold0267 (1 HSPs)
scaffold0267 (201-249)||(7179-7228)
[»] scaffold0116 (1 HSPs)
scaffold0116 (201-249)||(21800-21849)
[»] scaffold0047 (1 HSPs)
scaffold0047 (201-249)||(33724-33773)
[»] scaffold0038 (1 HSPs)
scaffold0038 (201-249)||(52557-52606)
[»] scaffold0002 (2 HSPs)
scaffold0002 (201-249)||(476156-476205)
scaffold0002 (201-249)||(482676-482725)
[»] scaffold0752 (1 HSPs)
scaffold0752 (200-247)||(613-661)
[»] scaffold0004 (1 HSPs)
scaffold0004 (201-249)||(210603-210651)


Alignment Details
Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 30 - 249
Target Start/End: Original strand, 14006720 - 14006927
Alignment:
Q  30 taagacattggatgactgatgcaaccatgtaggaatgatgttgtttatatgttgtgtatgcatgaatgcatgaatacgtaaaagtattaatgtatgattg 129  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||              
T  14006720 taagactttggatgactgatgcaaccatgtatgaatgatgttgtttatatgttgtgtatgcatgaatgtatgaatacgtgaaattattaa---------- 14006809  T
Q  130 tatgaatgtatgaatgcacaacnnnnnnngagagaatataaaag----tacaacttgtacgactgtataactgtatgaaggtgagaaaaacacaagaata 225  Q
          |||||||||| |||||        |||| ||||||| |    ||||||||||||||||||||||||||||||||||||||||||||||||||      
T  14006810 ------tgtatgaatgtacaactttttttaagaggatataaatgaatgtacaacttgtacgactgtataactgtatgaaggtgagaaaaacacaagaagg 14006903  T
Q  226 aggttgaattgtgttttctttttc 249  Q
     ||||||||||||||||| |||||    
T  14006904 gggttgaattgtgttttccttttc 14006927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 24 - 115
Target Start/End: Original strand, 16148876 - 16148968
Alignment:
Q  24 gccaaataagacattggatgactgatgcaaccatgtaggaat-gatgttgtttatatgttgtgtatgcatgaatgcatgaatacgtaaaagta 115  Q
    |||||| |||||  ||| |||| |||||||||||||| |||| |||||||| |||||| |||||||||||||||| |||||||||| ||||||    
T  16148876 gccaaacaagactctgggtgacagatgcaaccatgtatgaattgatgttgtgtatatgatgtgtatgcatgaatgtatgaatacgttaaagta 16148968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 42 - 104
Target Start/End: Original strand, 12474187 - 12474249
Alignment:
Q  42 tgactgatgcaaccatgtaggaatgatgttgtttatatgttgtgtatgcatgaatgcatgaat 104  Q
    ||||| |||||| |||||  |||||||||||| ||||| ||||||||||||||||| ||||||    
T  12474187 tgactaatgcaaacatgtgtgaatgatgttgtatatatattgtgtatgcatgaatgtatgaat 12474249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 42 - 104
Target Start/End: Original strand, 14882683 - 14882745
Alignment:
Q  42 tgactgatgcaaccatgtaggaatgatgttgtttatatgttgtgtatgcatgaatgcatgaat 104  Q
    ||||| |||||| |||||  |||||||||||| ||||| ||||||||||||||||| ||||||    
T  14882683 tgactaatgcaaacatgtgtgaatgatgttgtatatatattgtgtatgcatgaatgtatgaat 14882745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 249
Target Start/End: Original strand, 16031701 - 16031749
Alignment:
Q  202 gaaggtgagaaaaacacaagaata-aggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||| | ||||||||||||| ||||||||||    
T  16031701 gaaggtgagaaaaacacaagaagagaggttgaattgtgatttctttttc 16031749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 201 - 240
Target Start/End: Original strand, 11067442 - 11067481
Alignment:
Q  201 tgaaggtgagaaaaacacaagaataaggttgaattgtgtt 240  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  11067442 tgaaggtgagaaaaacacaagaaggaggttgaattgtgtt 11067481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 2025293 - 2025342
Alignment:
Q  201 tgaaggtgagaaaaacacaagaa-taaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||    |||||||||||||||||||||||    
T  2025293 tgaaggtgagaaaaacacaagaaggggggttgaattgtgttttctttttc 2025342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 4433164 - 4433213
Alignment:
Q  201 tgaaggtgagaaaaacacaagaa-taaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||    |||||||||||||||||||||||    
T  4433164 tgaaggtgagaaaaacacaagaaggggggttgaattgtgttttctttttc 4433213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 15848300 - 15848349
Alignment:
Q  201 tgaaggtgagaaaaacacaag-aataaggttgaattgtgttttctttttc 249  Q
    ||||||||||||||||||||| |||   ||||||||||||||||||||||    
T  15848300 tgaaggtgagaaaaacacaagaaatggtgttgaattgtgttttctttttc 15848349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 17910837 - 17910788
Alignment:
Q  201 tgaaggtgagaaaaacacaagaa-taaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||    |||||||||||||||||||||||    
T  17910837 tgaaggtgagaaaaacacaagaaggggggttgaattgtgttttctttttc 17910788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 17960805 - 17960854
Alignment:
Q  201 tgaaggtgagaaaaacacaagaa-taaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||    |||||||||||||||||||||||    
T  17960805 tgaaggtgagaaaaacacaagaaggggggttgaattgtgttttctttttc 17960854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 19888185 - 19888136
Alignment:
Q  201 tgaaggtgagaaaaacacaagaa-taaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||    |||||||||||||||||||||||    
T  19888185 tgaaggtgagaaaaacacaagaaggggggttgaattgtgttttctttttc 19888136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 21735576 - 21735625
Alignment:
Q  201 tgaaggtgagaaaaacacaagaa-taaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||    |||||||||||||||||||||||    
T  21735576 tgaaggtgagaaaaacacaagaaggggggttgaattgtgttttctttttc 21735625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 22150404 - 22150453
Alignment:
Q  201 tgaaggtgagaaaaacacaagaa-taaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||    |||||||||||||||||||||||    
T  22150404 tgaaggtgagaaaaacacaagaaggggggttgaattgtgttttctttttc 22150453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 28165380 - 28165429
Alignment:
Q  201 tgaaggtgagaaaaacacaagaa-taaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||    |||||||||||||||||||||||    
T  28165380 tgaaggtgagaaaaacacaagaaggggggttgaattgtgttttctttttc 28165429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 249
Target Start/End: Original strand, 4403674 - 4403726
Alignment:
Q  198 gtatgaaggtgagaaaaacacaagaa-taaggttgaattgtgttttctttttc 249  Q
    ||||||||||||||||||||||||||    ||||||| |||||||||||||||    
T  4403674 gtatgaaggtgagaaaaacacaagaaggggggttgaactgtgttttctttttc 4403726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 11073624 - 11073672
Alignment:
Q  201 tgaaggtgagaaaaacacaagaataaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||   ||||||||||||||  |||||||    
T  11073624 tgaaggtgagaaaaacacaagaagggggttgaattgtgttggctttttc 11073672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 13698556 - 13698604
Alignment:
Q  201 tgaaggtgagaaaaacacaagaataaggttgaattgtgttttctttttc 249  Q
    ||||||||||||||||| ||||||  ||||||||||||||  |||||||    
T  13698556 tgaaggtgagaaaaacataagaatggggttgaattgtgttagctttttc 13698604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 246
Target Start/End: Complemental strand, 15663571 - 15663523
Alignment:
Q  199 tatgaaggtgagaaaaacacaagaa-taaggttgaattgtgttttcttt 246  Q
    |||||||||||||||||||||||||    ||||||||||||||||||||    
T  15663571 tatgaaggtgagaaaaacacaagaaggggggttgaattgtgttttcttt 15663523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 15902393 - 15902441
Alignment:
Q  201 tgaaggtgagaaaaacacaagaataaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||   ||||||||||||||  |||||||    
T  15902393 tgaaggtgagaaaaacacaagaagggggttgaattgtgttagctttttc 15902441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0525 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0525
Description:

Target: scaffold0525; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 7054 - 7102
Alignment:
Q  201 tgaaggtgagaaaaacacaagaataaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||   |||||||||||||||||||||||    
T  7054 tgaaggtgagaaaaacacaagaagggggttgaattgtgttttctttttc 7102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 83494 - 83542
Alignment:
Q  201 tgaaggtgagaaaaacacaagaataaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||| |||||||||||||||  |||||||    
T  83494 tgaaggtgagaaaaacacaagaatgaggttgaattgtgttagctttttc 83542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 97
Target Start/End: Complemental strand, 156216 - 156167
Alignment:
Q  48 atgcaaccatgtaggaatgatgttgtttatatgttgtgtatgcatgaatg 97  Q
    |||||| |||||| |||||||||||| |||||  ||||||||||||||||    
T  156216 atgcaatcatgtatgaatgatgttgtgtatatactgtgtatgcatgaatg 156167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 9768012 - 9767964
Alignment:
Q  201 tgaaggtgagaaaaacacaagaataaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||   |||||||||||||||||||||||    
T  9768012 tgaaggtgagaaaaacacaagaagggggttgaattgtgttttctttttc 9767964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 202 - 249
Target Start/End: Original strand, 20310933 - 20310979
Alignment:
Q  202 gaaggtgagaaaaacacaagaataaggttgaattgtgttttctttttc 249  Q
    |||||||||||||| |||||||| ||| ||||||||||||||||||||    
T  20310933 gaaggtgagaaaaatacaagaatgagg-tgaattgtgttttctttttc 20310979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 202 - 249
Target Start/End: Original strand, 21097566 - 21097612
Alignment:
Q  202 gaaggtgagaaaaacacaagaataaggttgaattgtgttttctttttc 249  Q
    |||||||||||||| |||||||| ||| ||||||||||||||||||||    
T  21097566 gaaggtgagaaaaatacaagaatgagg-tgaattgtgttttctttttc 21097612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 26735844 - 26735794
Alignment:
Q  201 tgaaggtgagaaaaacacaagaataagg--ttgaattgtgttttctttttc 249  Q
    ||||||||||||||||||||||| | ||  |||||||||||||||||||||    
T  26735844 tgaaggtgagaaaaacacaagaagagggggttgaattgtgttttctttttc 26735794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 30213559 - 30213596
Alignment:
Q  203 aaggtgagaaaaacacaagaataaggttgaattgtgtt 240  Q
    |||||||||||||||||||||| |||||||||| ||||    
T  30213559 aaggtgagaaaaacacaagaatgaggttgaattttgtt 30213596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 30422391 - 30422342
Alignment:
Q  201 tgaaggtgagaaaaacacaagaata-aggttgaattgtgttttctttttc 249  Q
    ||||||||||||||||||||||| |  ||||||||||||||| |||||||    
T  30422391 tgaaggtgagaaaaacacaagaagaggggttgaattgtgtttgctttttc 30422342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 40214032 - 40213983
Alignment:
Q  201 tgaaggtgagaaaaacacaagaa-taaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||    |||||||||||||||||||||||    
T  40214032 tgaaggtgagaaaaacacaagaaggggggttgaattgtgttttctttttc 40213983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 45539445 - 45539396
Alignment:
Q  201 tgaaggtgagaaaaacacaagaa-taaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||    |||||||||||||||||||||||    
T  45539445 tgaaggtgagaaaaacacaagaaggggggttgaattgtgttttctttttc 45539396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 22672968 - 22673016
Alignment:
Q  201 tgaaggtgagaaaaacacaagaataaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||   ||||||||||||||  |||||||    
T  22672968 tgaaggtgagaaaaacacaagaagggggttgaattgtgttggctttttc 22673016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 8932954 - 8933002
Alignment:
Q  201 tgaaggtgagaaaaacacaagaataaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||   |||||||||||||||||||||||    
T  8932954 tgaaggtgagaaaaacacaagaagggggttgaattgtgttttctttttc 8933002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 42 - 104
Target Start/End: Original strand, 18158664 - 18158726
Alignment:
Q  42 tgactgatgcaaccatgtaggaatgatgttgtttatatgttgtgtatgcatgaatgcatgaat 104  Q
    ||||| |||||| |||||  |||||||||||| ||||| ||||||||||||||||| ||||||    
T  18158664 tgactaatgcaaacatgtgtgaatgatgttgtatatatattgtgtatgcatgaatgtatgaat 18158726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 4412930 - 4412882
Alignment:
Q  201 tgaaggtgagaaaaacacaagaataaggttgaattgtgttttctttttc 249  Q
    ||||||||||||||||| |||||   |||||||||||||||||||||||    
T  4412930 tgaaggtgagaaaaacaaaagaagggggttgaattgtgttttctttttc 4412882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 249
Target Start/End: Complemental strand, 13259408 - 13259357
Alignment:
Q  199 tatgaaggtgagaaaaacacaagaa-taaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||||    |||||||||||||||||||||||    
T  13259408 tatgaaggtgagaaaaacacaagaaggggggttgaattgtgttttctttttc 13259357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 249
Target Start/End: Complemental strand, 14746584 - 14746533
Alignment:
Q  199 tatgaaggtgagaaaaacacaagaa-taaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||||    |||||||||||||||||||||||    
T  14746584 tatgaaggtgagaaaaacacaagaaggggggttgaattgtgttttctttttc 14746533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 249
Target Start/End: Complemental strand, 24883308 - 24883257
Alignment:
Q  199 tatgaaggtgagaaaaacacaagaa-taaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||||    |||||||||||||||||||||||    
T  24883308 tatgaaggtgagaaaaacacaagaaggggggttgaattgtgttttctttttc 24883257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 249
Target Start/End: Complemental strand, 4433504 - 4433454
Alignment:
Q  200 atgaaggtgagaaaaacacaagaa-taaggttgaattgtgttttctttttc 249  Q
    ||||||||||||||||||||||||    |||||||||||||||||||||||    
T  4433504 atgaaggtgagaaaaacacaagaaggggggttgaattgtgttttctttttc 4433454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 1560006 - 1559957
Alignment:
Q  201 tgaaggtgagaaaaacacaagaa-taaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||    |||||||||||||||||||||||    
T  1560006 tgaaggtgagaaaaacacaagaaggggggttgaattgtgttttctttttc 1559957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 6045193 - 6045144
Alignment:
Q  201 tgaaggtgagaaaaacacaagaa-taaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||    |||||||||||||||||||||||    
T  6045193 tgaaggtgagaaaaacacaagaaggggggttgaattgtgttttctttttc 6045144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 249
Target Start/End: Complemental strand, 11088011 - 11087955
Alignment:
Q  195 actgtatgaaggtgagaaaaacacaagaata--aggttgaattgtgttttctttttc 249  Q
    ||||| ||||||||||||||||||||||| |   ||||||||| |||||||||||||    
T  11088011 actgtctgaaggtgagaaaaacacaagaagagggggttgaattttgttttctttttc 11087955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 13027914 - 13027865
Alignment:
Q  201 tgaaggtgagaaaaacacaagaa-taaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||   |||||||||||||||| |||||||    
T  13027914 tgaaggtgagaaaaacacaagaagggaggttgaattgtgtttgctttttc 13027865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 18440584 - 18440633
Alignment:
Q  201 tgaaggtgagaaaaacacaagaa-taaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||    |||||||||||||||||||||||    
T  18440584 tgaaggtgagaaaaacacaagaaggggggttgaattgtgttttctttttc 18440633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 8182153 - 8182201
Alignment:
Q  201 tgaaggtgagaaaaacacaagaataaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||   ||||||||||||||  |||||||    
T  8182153 tgaaggtgagaaaaacacaagaagggggttgaattgtgttgcctttttc 8182201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 240
Target Start/End: Complemental strand, 11030335 - 11030295
Alignment:
Q  201 tgaaggtgagaaaaacacaagaat-aaggttgaattgtgtt 240  Q
    ||||||||| |||||||||||||| ||||||||||||||||    
T  11030335 tgaaggtgaaaaaaacacaagaatgaaggttgaattgtgtt 11030295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 90375 - 90327
Alignment:
Q  201 tgaaggtgagaaaaacacaagaataaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||| |||||||||||||||  |||||||    
T  90375 tgaaggtgagaaaaacacaagaatgaggttgaattgtgttagctttttc 90327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 2157211 - 2157162
Alignment:
Q  201 tgaaggtgagaaaaacacaagaata-aggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||   ||||||||||||||||||||||||    
T  2157211 tgaaggtgagaaaaacacaagaagggaggttgaattgtgttttctttttc 2157162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 17446005 - 17446054
Alignment:
Q  201 tgaaggtgagaaaaacacaagaata-aggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||   ||||||||||||||||||||||||    
T  17446005 tgaaggtgagaaaaacacaagaagggaggttgaattgtgttttctttttc 17446054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 249
Target Start/End: Complemental strand, 35544054 - 35544003
Alignment:
Q  200 atgaaggtgagaaaaacacaagaata--aggttgaattgtgttttctttttc 249  Q
    ||||||||||||||||||||||||    ||||||||||||||||||||||||    
T  35544054 atgaaggtgagaaaaacacaagaaggggaggttgaattgtgttttctttttc 35544003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 249
Target Start/End: Original strand, 21702432 - 21702482
Alignment:
Q  200 atgaaggtgagaaaaacacaagaa-taaggttgaattgtgttttctttttc 249  Q
    ||||||||||||||||||||||||    |||||||||||||||||||||||    
T  21702432 atgaaggtgagaaaaacacaagaaggggggttgaattgtgttttctttttc 21702482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 30742133 - 30742183
Alignment:
Q  199 tatgaaggtgagaaaaacacaagaataaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||||   ||||||||||||||  |||||||    
T  30742133 tatgaaggtgagaaaaacacaagaagggggttgaattgtgttgactttttc 30742183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 3246403 - 3246354
Alignment:
Q  201 tgaaggtgagaaaaacacaagaa-taaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||    |||||||||||||||||||||||    
T  3246403 tgaaggtgagaaaaacacaagaaggggggttgaattgtgttttctttttc 3246354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 13533176 - 13533225
Alignment:
Q  201 tgaaggtgagaaaaacacaagaa-taaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||    |||||||||||||||||||||||    
T  13533176 tgaaggtgagaaaaacacaagaaggggggttgaattgtgttttctttttc 13533225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 17456621 - 17456670
Alignment:
Q  201 tgaaggtgagaaaaacacaagaa-taaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||    |||||||||||||||||||||||    
T  17456621 tgaaggtgagaaaaacacaagaaggggggttgaattgtgttttctttttc 17456670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 40033723 - 40033674
Alignment:
Q  201 tgaaggtgagaaaaacacaagaa-taaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||    |||||||||||||||||||||||    
T  40033723 tgaaggtgagaaaaacacaagaaggggggttgaattgtgttttctttttc 40033674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 26120760 - 26120712
Alignment:
Q  201 tgaaggtgagaaaaacacaagaataaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||   ||||||||||||||  |||||||    
T  26120760 tgaaggtgagaaaaacacaagaagggggttgaattgtgttagctttttc 26120712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 55650742 - 55650796
Alignment:
Q  197 tgtatgaaggtgagaaaaacacaagaataa--ggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||||||  |  |||||||||||||||||||||||    
T  55650742 tgtatgaaggtgagaaaaacacaagaaggaggggttgaattgtgttttctttttc 55650796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 49002816 - 49002767
Alignment:
Q  201 tgaaggtgagaaaaacacaagaat-aaggttgaattgtgttttctttttc 249  Q
    ||||||||||||||||||||||||   |||||||||||||||||||||||    
T  49002816 tgaaggtgagaaaaacacaagaatgggggttgaattgtgttttctttttc 49002767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 19241402 - 19241452
Alignment:
Q  201 tgaaggtgagaaaaacacaagaa--taaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||   | |||||||||||||||||||||||    
T  19241402 tgaaggtgagaaaaacacaagaagggagggttgaattgtgttttctttttc 19241452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 11514459 - 11514508
Alignment:
Q  201 tgaaggtgagaaaaacacaagaa-taaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||    |||||||||||||||||||||||    
T  11514459 tgaaggtgagaaaaacacaagaaggggggttgaattgtgttttctttttc 11514508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 14836939 - 14836890
Alignment:
Q  201 tgaaggtgagaaaaacacaagaa-taaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||    |||||||||||||||||||||||    
T  14836939 tgaaggtgagaaaaacacaagaaggggggttgaattgtgttttctttttc 14836890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 19570440 - 19570489
Alignment:
Q  201 tgaaggtgagaaaaacacaagaa-taaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||    |||||||||||||||||||||||    
T  19570440 tgaaggtgagaaaaacacaagaaggggggttgaattgtgttttctttttc 19570489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 22190038 - 22190087
Alignment:
Q  201 tgaaggtgagaaaaacacaagaataagg-ttgaattgtgttttctttttc 249  Q
    ||||||||||||||||| ||||| | || |||||||||||||||||||||    
T  22190038 tgaaggtgagaaaaacataagaagaggggttgaattgtgttttctttttc 22190087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 31267627 - 31267578
Alignment:
Q  201 tgaaggtgagaaaaacacaagaa-taaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||    |||||||||||||||||||||||    
T  31267627 tgaaggtgagaaaaacacaagaaggggggttgaattgtgttttctttttc 31267578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 33377563 - 33377612
Alignment:
Q  201 tgaaggtgagaaaaacacaagaa-taaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||    |||||||||||||||||||||||    
T  33377563 tgaaggtgagaaaaacacaagaaggggggttgaattgtgttttctttttc 33377612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 22089478 - 22089526
Alignment:
Q  201 tgaaggtgagaaaaacacaagaataaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||   ||||||||||||||  |||||||    
T  22089478 tgaaggtgagaaaaacacaagaagggggttgaattgtgttaactttttc 22089526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 42 - 104
Target Start/End: Original strand, 20454123 - 20454185
Alignment:
Q  42 tgactgatgcaaccatgtaggaatgatgttgtttatatgttgtgtatgcatgaatgcatgaat 104  Q
    ||||| |||||| |||||  |||||||||||| ||||| ||||||||||||||||| ||||||    
T  20454123 tgactaatgcaaacatgtgtgaatgatgttgtatatatattgtgtatgcatgaatgtatgaat 20454185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 31930802 - 31930851
Alignment:
Q  201 tgaaggtgagaaaaacacaagaata-aggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||   ||||||||||||||||||||||||    
T  31930802 tgaaggtgagaaaaacacaagaagggaggttgaattgtgttttctttttc 31930851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 33353199 - 33353151
Alignment:
Q  201 tgaaggtgagaaaaacacaagaataaggttgaattgtgttttctttttc 249  Q
    ||||||||||||||||||| |||   |||||||||||||||||||||||    
T  33353199 tgaaggtgagaaaaacacaggaagggggttgaattgtgttttctttttc 33353151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 249
Target Start/End: Complemental strand, 16124378 - 16124327
Alignment:
Q  199 tatgaaggtgagaaaaacacaagaa-taaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||||    |||||||||||||||||||||||    
T  16124378 tatgaaggtgagaaaaacacaagaaggggggttgaattgtgttttctttttc 16124327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 20634879 - 20634929
Alignment:
Q  201 tgaaggtgagaaaaacacaagaat--aaggttgaattgtgttttctttttc 249  Q
    ||||||||||||||||||||||||    |||||||||||||||||||||||    
T  20634879 tgaaggtgagaaaaacacaagaatggggggttgaattgtgttttctttttc 20634929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 249
Target Start/End: Complemental strand, 19833943 - 19833893
Alignment:
Q  200 atgaaggtgagaaaaacacaagaa-taaggttgaattgtgttttctttttc 249  Q
    ||||||||||||||||||||||||    |||||||||||||||||||||||    
T  19833943 atgaaggtgagaaaaacacaagaaggggggttgaattgtgttttctttttc 19833893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 12347282 - 12347333
Alignment:
Q  201 tgaaggtgagaaaaacacaagaataa---ggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||| |   |||||||||||| ||||||||||    
T  12347282 tgaaggtgagaaaaacacaagaatgagggggttgaattgtggtttctttttc 12347333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 12352932 - 12352981
Alignment:
Q  201 tgaaggtgagaaaaacacaagaa-taaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||    |||||||||||||||||||||||    
T  12352932 tgaaggtgagaaaaacacaagaaggggggttgaattgtgttttctttttc 12352981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 17446593 - 17446544
Alignment:
Q  201 tgaaggtgagaaaaacacaag-aataaggttgaattgtgttttctttttc 249  Q
    ||||||||||||||||||||| || ||||||||||||||||  |||||||    
T  17446593 tgaaggtgagaaaaacacaagaaagaaggttgaattgtgttaactttttc 17446544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 19453510 - 19453461
Alignment:
Q  201 tgaaggtgagaaaaacacaagaa-taaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||    |||||||||||||||||||||||    
T  19453510 tgaaggtgagaaaaacacaagaaggggggttgaattgtgttttctttttc 19453461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 27720721 - 27720772
Alignment:
Q  201 tgaaggtgagaaaaacacaagaata---aggttgaattgtgttttctttttc 249  Q
    ||||||||||||||||||||||| |    |||||||||||||||||||||||    
T  27720721 tgaaggtgagaaaaacacaagaagaggggggttgaattgtgttttctttttc 27720772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 28252406 - 28252357
Alignment:
Q  201 tgaaggtgagaaaaacacaagaa-taaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||    |||||||||||||||||||||||    
T  28252406 tgaaggtgagaaaaacacaagaaggggggttgaattgtgttttctttttc 28252357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 32756756 - 32756805
Alignment:
Q  201 tgaaggtgagaaaaacacaagaa-taaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||    |||||||||||||||||||||||    
T  32756756 tgaaggtgagaaaaacacaagaaggggggttgaattgtgttttctttttc 32756805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 33866498 - 33866547
Alignment:
Q  201 tgaaggtgagaaaaacacaagaa-taaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||    |||||||||||||||||||||||    
T  33866498 tgaaggtgagaaaaacacaagaaggggggttgaattgtgttttctttttc 33866547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 249
Target Start/End: Original strand, 10631330 - 10631381
Alignment:
Q  200 atgaaggtgagaaaaacacaagaat--aaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||||  | ||||||||||||||  |||||||    
T  10631330 atgaaggtgagaaaaacacaagaatggagggttgaattgtgttagctttttc 10631381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 249
Target Start/End: Complemental strand, 15532586 - 15532535
Alignment:
Q  200 atgaaggtgagaaaaacacaagaataa--ggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||| ||  ||||||||||||||  |||||||    
T  15532586 atgaaggtgagaaaaacacaagaagaaggggttgaattgtgttagctttttc 15532535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 22801339 - 22801387
Alignment:
Q  201 tgaaggtgagaaaaacacaagaataaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||   ||||||||||||||  |||||||    
T  22801339 tgaaggtgagaaaaacacaagaagggggttgaattgtgttagctttttc 22801387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 200 - 249
Target Start/End: Complemental strand, 14389005 - 14388955
Alignment:
Q  200 atgaaggtgagaaaaacacaagaataag-gttgaattgtgttttctttttc 249  Q
    ||||||||||||||||||||||||  || ||||||||||||||||||||||    
T  14389005 atgaaggtgagaaaaacacaagaaggagagttgaattgtgttttctttttc 14388955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 249
Target Start/End: Complemental strand, 51657331 - 51657277
Alignment:
Q  196 ctgtatgaaggtgagaaaaacacaagaa-taaggttgaattgtgttttctttttc 249  Q
    ||||||||||||||||||||||||||||    |||||||||||||||||||||||    
T  51657331 ctgtatgaaggtgagaaaaacacaagaaggggggttgaattgtgttttctttttc 51657277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 46181730 - 46181681
Alignment:
Q  201 tgaaggtgagaaaaacacaagaataagg-ttgaattgtgttttctttttc 249  Q
    ||||||||||||||||||||||| | || |||||||||||||||||||||    
T  46181730 tgaaggtgagaaaaacacaagaagaggggttgaattgtgttttctttttc 46181681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 19037163 - 19037214
Alignment:
Q  199 tatgaaggtgagaaaaacacaagaa-taaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||||    |||||||||||||||||||||||    
T  19037163 tatgaaggtgagaaaaacacaagaaggggggttgaattgtgttttctttttc 19037214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 34256403 - 34256353
Alignment:
Q  201 tgaaggtgagaaaaacacaagaat--aaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||   | |||||||||||||||||||||||    
T  34256403 tgaaggtgagaaaaacacaagaagggagggttgaattgtgttttctttttc 34256353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 104
Target Start/End: Complemental strand, 1960830 - 1960788
Alignment:
Q  62 gaatgatgttgtttatatgttgtgtatgcatgaatgcatgaat 104  Q
    |||||||||||| ||||| ||||||||||||||||| ||||||    
T  1960830 gaatgatgttgtatatatattgtgtatgcatgaatgtatgaat 1960788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 12283588 - 12283638
Alignment:
Q  199 tatgaaggtgagaaaaacacaagaataaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||||  | |||||||||||||  |||||||    
T  12283588 tatgaaggtgagaaaaacacaagaaggatgttgaattgtgttagctttttc 12283638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 249
Target Start/End: Complemental strand, 16234004 - 16233954
Alignment:
Q  199 tatgaaggtgagaaaaacacaagaataaggttgaattgtgttttctttttc 249  Q
    ||||||||||||||||||| |||||  |||||||||||||||  |||||||    
T  16234004 tatgaaggtgagaaaaacataagaaggaggttgaattgtgttagctttttc 16233954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 145
Target Start/End: Original strand, 6198953 - 6199022
Alignment:
Q  76 atatgttgtgtatgcatgaatgcatgaatacgtaaaagtattaatgtatgattgtatgaatgtatgaatg 145  Q
    ||||||||| || ||||||||| ||||||| || |||||||| ||| |||| || ||| |||||||||||    
T  6198953 atatgttgtatacgcatgaatgtatgaatatgtgaaagtattgatgcatgaatgcatgtatgtatgaatg 6199022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 19171248 - 19171199
Alignment:
Q  201 tgaaggtgagaaaaacacaagaa-taaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||    |||||||||||||||||||||||    
T  19171248 tgaaggtgagaaaaacacaagaaggggggttgaattgtgttttctttttc 19171199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 22202764 - 22202716
Alignment:
Q  201 tgaaggtgagaaaaacacaagaataaggttgaattgtgttttctttttc 249  Q
    ||||||||||||||||||||| |   |||||||||||||| ||||||||    
T  22202764 tgaaggtgagaaaaacacaaggagggggttgaattgtgttatctttttc 22202716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0859 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0859
Description:

Target: scaffold0859; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 2166 - 2215
Alignment:
Q  201 tgaaggtgagaaaaacacaagaa-taaggttgaattgtgttttctttttc 249  Q
    ||||||||||||||||||||||| |  |||||||||||||||||||||||    
T  2166 tgaaggtgagaaaaacacaagaagtggggttgaattgtgttttctttttc 2215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0582 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0582
Description:

Target: scaffold0582; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 93
Target Start/End: Original strand, 2388 - 2456
Alignment:
Q  25 ccaaataagacattggatgactgatgcaaccatgtaggaatgatgttgtttatatgttgtgtatgcatg 93  Q
    ||||| |||||  ||| ||||||||||  |||| || |||||||||||| |||||||||||||||||||    
T  2388 ccaaacaagactctgggtgactgatgcggccatatatgaatgatgttgtgtatatgttgtgtatgcatg 2456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 363 - 313
Alignment:
Q  201 tgaaggtgagaaaaacacaagaata--aggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||    ||||||||||||||||||||||||    
T  363 tgaaggtgagaaaaacacaagaaggggaggttgaattgtgttttctttttc 313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 10140 - 10190
Alignment:
Q  201 tgaaggtgagaaaaacacaagaata--aggttgaattgtgttttctttttc 249  Q
    ||||||||||||||||||||||| |   |||||||||||||||||||||||    
T  10140 tgaaggtgagaaaaacacaagaagagggggttgaattgtgttttctttttc 10190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 57656 - 57606
Alignment:
Q  201 tgaaggtgagaaaaacacaagaataagg--ttgaattgtgttttctttttc 249  Q
    ||||||||||||||||||||||| | ||  |||||||||||||||||||||    
T  57656 tgaaggtgagaaaaacacaagaagagggggttgaattgtgttttctttttc 57606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 1041526 - 1041577
Alignment:
Q  199 tatgaaggtgagaaaaacacaagaa-taaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||||    |||||||||||||||||||||||    
T  1041526 tatgaaggtgagaaaaacacaagaaggggggttgaattgtgttttctttttc 1041577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 19313843 - 19313793
Alignment:
Q  201 tgaaggtgagaaaaacacaagaat--aaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||   | |||||||||||||||||||||||    
T  19313843 tgaaggtgagaaaaacacaagaagtgagggttgaattgtgttttctttttc 19313793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 20319562 - 20319512
Alignment:
Q  201 tgaaggtgagaaaaacacaagaataagg--ttgaattgtgttttctttttc 249  Q
    ||||||||||||||||||||||| | ||  |||||||||||||||||||||    
T  20319562 tgaaggtgagaaaaacacaagaagagggggttgaattgtgttttctttttc 20319512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 22773734 - 22773784
Alignment:
Q  201 tgaaggtgagaaaaacacaagaata--aggttgaattgtgttttctttttc 249  Q
    ||||||||||||||||||||||| |   |||||||||||||||||||||||    
T  22773734 tgaaggtgagaaaaacacaagaagagggggttgaattgtgttttctttttc 22773784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 249
Target Start/End: Complemental strand, 28732755 - 28732704
Alignment:
Q  199 tatgaaggtgagaaaaacacaagaa-taaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||||    |||||||||||||||||||||||    
T  28732755 tatgaaggtgagaaaaacacaagaaggggggttgaattgtgttttctttttc 28732704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 249
Target Start/End: Complemental strand, 41122585 - 41122534
Alignment:
Q  199 tatgaaggtgagaaaaacacaagaa-taaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||||  | ||||||||||||||| |||||||    
T  41122585 tatgaaggtgagaaaaacacaagaaggagggttgaattgtgtttactttttc 41122534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 104
Target Start/End: Complemental strand, 24695374 - 24695332
Alignment:
Q  62 gaatgatgttgtttatatgttgtgtatgcatgaatgcatgaat 104  Q
    |||||||||||| ||||| ||||||||||||||||| ||||||    
T  24695374 gaatgatgttgtatatatattgtgtatgcatgaatgtatgaat 24695332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 24450356 - 24450307
Alignment:
Q  201 tgaaggtgagaaaaacacaagaa-taaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||    |||||||||||||||||||||||    
T  24450356 tgaaggtgagaaaaacacaagaaggggggttgaattgtgttttctttttc 24450307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 24851577 - 24851528
Alignment:
Q  201 tgaaggtgagaaaaacacaagaa-taaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||  | ||||||||||||||| |||||||    
T  24851577 tgaaggtgagaaaaacacaagaaggagggttgaattgtgtttgctttttc 24851528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 28702129 - 28702080
Alignment:
Q  201 tgaaggtgagaaaaacacaagaa-taaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||    |||||||||||||||||||||||    
T  28702129 tgaaggtgagaaaaacacaagaaggggggttgaattgtgttttctttttc 28702080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 45087902 - 45087853
Alignment:
Q  201 tgaaggtgagaaaaacacaagaa-taaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||    |||||||||||||||||||||||    
T  45087902 tgaaggtgagaaaaacacaagaaggggggttgaattgtgttttctttttc 45087853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 40388017 - 40388073
Alignment:
Q  42 tgactgatgcaaccatgtaggaat-gatgttgtttatatgttgtgtatgcatgaatg 97  Q
    ||||||||||||||||||  |||| |||||||  |||||||||||| ||||||||||    
T  40388017 tgactgatgcaaccatgtgtgaattgatgttgcatatatgttgtgtgtgcatgaatg 40388073  T

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Target: scaffold0391 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 249
Target Start/End: Complemental strand, 3092 - 3042
Alignment:
Q  200 atgaaggtgagaaaaacacaagaa-taaggttgaattgtgttttctttttc 249  Q
    ||||||||||||||||||||||||    |||||||||||||||||||||||    
T  3092 atgaaggtgagaaaaacacaagaaggggggttgaattgtgttttctttttc 3042  T

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Target: scaffold0068 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 249
Target Start/End: Complemental strand, 11478 - 11428
Alignment:
Q  200 atgaaggtgagaaaaacacaagaa-taaggttgaattgtgttttctttttc 249  Q
    ||||||||||||||||||||||||    |||||||||||||||||||||||    
T  11478 atgaaggtgagaaaaacacaagaaggggggttgaattgtgttttctttttc 11428  T

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Target: scaffold0035 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 28974 - 29024
Alignment:
Q  199 tatgaaggtgagaaaaacacaagaataaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||||   |||| ||||||| ||||||||||    
T  28974 tatgaaggtgagaaaaacacaagaagggggttaaattgtggtttctttttc 29024  T

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Target: scaffold0011 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 250843 - 250885
Alignment:
Q  199 tatgaaggtgagaaaaacacaagaata-aggttgaattgtgtt 240  Q
    ||||||||||||||||||||||||| | |||||||||||||||    
T  250843 tatgaaggtgagaaaaacacaagaagagaggttgaattgtgtt 250885  T

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Target: scaffold0267 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 7228 - 7179
Alignment:
Q  201 tgaaggtgagaaaaacacaagaa-taaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||    |||||||||||||||||||||||    
T  7228 tgaaggtgagaaaaacacaagaaggggggttgaattgtgttttctttttc 7179  T

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Target: scaffold0116 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 21849 - 21800
Alignment:
Q  201 tgaaggtgagaaaaacacaagaa-taaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||    |||||||||||||||||||||||    
T  21849 tgaaggtgagaaaaacacaagaaggggggttgaattgtgttttctttttc 21800  T

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Target: scaffold0047 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 33773 - 33724
Alignment:
Q  201 tgaaggtgagaaaaacacaagaa-taaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||    |||||||||||||||||||||||    
T  33773 tgaaggtgagaaaaacacaagaaggggggttgaattgtgttttctttttc 33724  T

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Target: scaffold0038 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 52606 - 52557
Alignment:
Q  201 tgaaggtgagaaaaacacaagaa-taaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||    |||||||||||||||||||||||    
T  52606 tgaaggtgagaaaaacacaagaaggggggttgaattgtgttttctttttc 52557  T

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Target: scaffold0002 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 476205 - 476156
Alignment:
Q  201 tgaaggtgagaaaaacacaagaa-taaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||    |||||||||||||||||||||||    
T  476205 tgaaggtgagaaaaacacaagaaggggggttgaattgtgttttctttttc 476156  T

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Target: scaffold0002; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 482725 - 482676
Alignment:
Q  201 tgaaggtgagaaaaacacaagaa-taaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||    |||||||||||||||||||||||    
T  482725 tgaaggtgagaaaaacacaagaaggggggttgaattgtgttttctttttc 482676  T

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Target: scaffold0752 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0752
Description:

Target: scaffold0752; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 247
Target Start/End: Original strand, 613 - 661
Alignment:
Q  200 atgaaggtgagaaaaacacaagaa-taaggttgaattgtgttttctttt 247  Q
    ||||||||||||||||||||||||    |||||||||||||||||||||    
T  613 atgaaggtgagaaaaacacaagaaggggggttgaattgtgttttctttt 661  T

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Target: scaffold0004 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 210603 - 210651
Alignment:
Q  201 tgaaggtgagaaaaacacaagaataaggttgaattgtgttttctttttc 249  Q
    |||||||||||||||||||||||   ||||||||||||||  |||||||    
T  210603 tgaaggtgagaaaaacacaagaagggggttgaattgtgttggctttttc 210651  T

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