View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3856_low_65 (Length: 247)
Name: NF3856_low_65
Description: NF3856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3856_low_65 |
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| [»] scaffold0470 (1 HSPs) |
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Alignment Details
Target: scaffold0470 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: scaffold0470
Description:
Target: scaffold0470; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 19 - 225
Target Start/End: Complemental strand, 909 - 700
Alignment:
| Q |
19 |
ggagcaccaatatcgtggaacaaataataaattacaagtgagtgatga---gtacatgtgccctaaatttatgacccatgttaaggaacttaatataaat |
115 |
Q |
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|||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
909 |
ggagcatcaatatcgtggaacaaataacaaattacaagtgagtgatgatgagtacatgtgccctaagtttatgacccatgttgaggaacttaatataaaa |
810 |
T |
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| Q |
116 |
atttcattagtaagacnnnnnnnnggttaggaaacatgagtacactaaaagact-agtctaaacttctgaaatttcattagtaagacaacaaaaaatggt |
214 |
Q |
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| T |
809 |
atttcattagtaagac-aaaaaaaggttaggaaacatgagtacactaaaagactaagtctaaacttctgaaatttcattagtaagacaacaaaaaatggt |
711 |
T |
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| Q |
215 |
tacccatatcc |
225 |
Q |
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||| ||||||| |
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| T |
710 |
tactcatatcc |
700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 19 - 225
Target Start/End: Complemental strand, 6611621 - 6611412
Alignment:
| Q |
19 |
ggagcaccaatatcgtggaacaaataataaattacaagtgagtgatga---gtacatgtgccctaaatttatgacccatgttaaggaacttaatataaat |
115 |
Q |
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|||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
6611621 |
ggagcatcaatatcgtggaacaaataacaaattacaagtgagtgatgatgagtacatgtgccctaagtttatgacccatgttgaggaacttaatataaaa |
6611522 |
T |
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| Q |
116 |
atttcattagtaagacnnnnnnnnggttaggaaacatgagtacactaaaagact-agtctaaacttctgaaatttcattagtaagacaacaaaaaatggt |
214 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6611521 |
atttcattagtaagac-aaaaaaaggttaggaaacatgagtacactaaaagactaagtctaaacttctgaaatttcattagtaagacaacaaaaaatggt |
6611423 |
T |
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| Q |
215 |
tacccatatcc |
225 |
Q |
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||| ||||||| |
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| T |
6611422 |
tactcatatcc |
6611412 |
T |
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