View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3856_low_69 (Length: 240)
Name: NF3856_low_69
Description: NF3856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3856_low_69 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 55208603 - 55208832
Alignment:
| Q |
1 |
caggttattagttattagttttcccttttcaattttaatatacatatgtaatcatcatgttttatatgttactatgattaattggtcgttttttatggtg |
100 |
Q |
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| T |
55208603 |
caggttattagttattagttttcccttttcaattttaatatacatatgtaatcatcatgttttatatgttactataattaattggtcgttttttatggtg |
55208702 |
T |
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| Q |
101 |
acagaacgagaaattgagactattgttgcaagagcagcgaaggacaatattgaagaaggtggaatatgatgtgtttcatatactaagacaaaaggatgaa |
200 |
Q |
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| T |
55208703 |
acagaacgagaaattgagactattgttgcaagagcagcgaaggacaatattgaagaaggtagaatatgatgtgtttcatatactaagacaaaaggatgaa |
55208802 |
T |
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| Q |
201 |
caaattgcacaagcgacgaagaaaatgatg |
230 |
Q |
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| T |
55208803 |
caaattgcacaagcgacgaagaaaaggatg |
55208832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 142 - 225
Target Start/End: Original strand, 13135212 - 13135295
Alignment:
| Q |
142 |
ggacaatattgaagaaggtggaatatgatgtgtttcatatactaagacaaaaggatgaacaaattgcacaagcgacgaagaaaa |
225 |
Q |
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| T |
13135212 |
ggacattattgaagaaggtagaatcggatatgtgtcatatactaagacaaaaggatgaacaaatagcacaagcgacaaagaaaa |
13135295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 136
Target Start/End: Original strand, 13135148 - 13135194
Alignment:
| Q |
90 |
tttttatggtgacagaacgagaaattgagactattgttgcaagagca |
136 |
Q |
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| T |
13135148 |
tttttgtggtgacagagcgagaaattgagaatattggtgcaagagca |
13135194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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