View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3856_low_7 (Length: 552)

Name: NF3856_low_7
Description: NF3856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3856_low_7
NF3856_low_7
[»] chr7 (4 HSPs)
chr7 (20-343)||(11672943-11673266)
chr7 (390-542)||(11673312-11673464)
chr7 (40-106)||(7850485-7850550)
chr7 (69-105)||(26909735-26909771)
[»] chr5 (3 HSPs)
chr5 (145-333)||(18915458-18915645)
chr5 (427-542)||(18915248-18915363)
chr5 (40-106)||(26852251-26852316)
[»] chr4 (1 HSPs)
chr4 (43-106)||(55877102-55877165)
[»] scaffold0093 (1 HSPs)
scaffold0093 (40-106)||(44049-44114)
[»] scaffold0317 (1 HSPs)
scaffold0317 (69-106)||(19444-19481)
[»] chr3 (1 HSPs)
chr3 (69-106)||(11394358-11394395)
[»] chr1 (1 HSPs)
chr1 (69-106)||(32440326-32440363)


Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-144; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 20 - 343
Target Start/End: Original strand, 11672943 - 11673266
Alignment:
Q  20 ccatgatggcatcagctcttgccatttcatctccgccgaccccgtctccgattccgacctaacactttcttcttgctcaaatcagaaaattcacagtcct 119  Q
    |||||| |||| |||||||||||||||||||||||||||||||||||| ||||  |||| |||||||||||||||||||||||||||| ||||| |||||    
T  11672943 ccatgacggcaccagctcttgccatttcatctccgccgaccccgtctctgattttgacccaacactttcttcttgctcaaatcagaaagttcacggtcct 11673042  T
Q  120 ttcataattctttcaaatacgatacaaaataaacacaaaccgcgaagaactaagttgtttcaaattcaaatcacagcaacactattcacggcaaaaaaca 219  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||    
T  11673043 ttcataattctttcaaatacgatacaaaataaacacaaaccgtgaagaactacattgtttcaaattcaaatcacagcaacactattcactgcaaaaaaca 11673142  T
Q  220 atgaatgcaaaaagtatcacattgaaatcgtagaaattgttgattccaatcagtgacgctattttcataattcaatttgcgcctaattctaacaaccttc 319  Q
    ||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11673143 atgaacgcaagaagtatctcattgaaatcgtagaaattgttgattccaatcagtgacgctattttcataattcaatttgcgcctaattctaacaaccttc 11673242  T
Q  320 tcatttcatcttggtattcagtaa 343  Q
    |||||||||||||| |||||||||    
T  11673243 tcatttcatcttgggattcagtaa 11673266  T

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Target: chr7; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 390 - 542
Target Start/End: Original strand, 11673312 - 11673464
Alignment:
Q  390 gcatttcactgaattgaatcgacttttcgatgtggggttttcagaatcttcgtttatacaatttggaagcttctgtggttagattacaagcgaattcagc 489  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||| |||||||||| ||||||| ||||||||||||     
T  11673312 gcatttcactgaattgaatcgacttttcgatgtgggttttgcagaatcttcgtttatgcaatttggatgcttctgtggatagattagaagcgaattcaga 11673411  T
Q  490 agctgctcttcttgattgttgcttctctgaggatgattctgattctttctctg 542  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11673412 agctgctcttcttgattgttgcttctctgaggatgattctgtttctttctctg 11673464  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 40 - 106
Target Start/End: Complemental strand, 7850550 - 7850485
Alignment:
Q  40 gccatttcatctccgccgaccccgtctccgattccgacctaacactttcttcttgctcaaatcagaa 106  Q
    ||||||||||||||||||   ||||||| |||||||||| |||||||||||||||||||||||||||    
T  7850550 gccatttcatctccgccgtagccgtctctgattccgacc-aacactttcttcttgctcaaatcagaa 7850485  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 69 - 105
Target Start/End: Complemental strand, 26909771 - 26909735
Alignment:
Q  69 gattccgacctaacactttcttcttgctcaaatcaga 105  Q
    |||||||||| |||||||| |||||||||||||||||    
T  26909771 gattccgacccaacacttttttcttgctcaaatcaga 26909735  T

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Target: chr5 (Bit Score: 77; Significance: 2e-35; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 145 - 333
Target Start/End: Complemental strand, 18915645 - 18915458
Alignment:
Q  145 aaaataaacacaaaccgcgaagaactaagttgtttcaaattcaaatcacagcaacactattcacggcaaaaaacaatgaatgcaaaaagtatcacattga 244  Q
    |||| ||||||||||||||||||||  | ||||||||||||||||||||| ||||| | ||||| ||||| || ||||||  |||||| || | ||| ||    
T  18915645 aaaaaaaacacaaaccgcgaagaacaca-ttgtttcaaattcaaatcacaacaacattgttcactgcaaacaaaaatgaacacaaaaaatagctcatcga 18915547  T
Q  245 aatcgtagaaattgttgattccaatcagtgacgctattttcataattcaatttgcgcctaattctaacaaccttctcatttcatcttgg 333  Q
    ||||| ||| | |||  ||||||||| |||| || |||| || ||||||||||| ||||||||||||||||||||||||||||||||||    
T  18915546 aatcgaagatactgtcaattccaatcggtgatgcaatttccagaattcaatttgggcctaattctaacaaccttctcatttcatcttgg 18915458  T

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Target: chr5; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 427 - 542
Target Start/End: Complemental strand, 18915363 - 18915248
Alignment:
Q  427 ttttcagaatcttcgtttatacaatttggaagcttctgtggttagattacaagcgaattcagcagctgctcttcttgattgttgcttctctgaggatgat 526  Q
    |||||||||||||||||| ||| |||| || |||||||||||||||||| |||| ||||||| |||| |||||||||||||||| |||||||||||||||    
T  18915363 ttttcagaatcttcgtttgtacgatttcgacgcttctgtggttagattagaagctaattcagaagcttctcttcttgattgttgtttctctgaggatgat 18915264  T
Q  527 tctgattctttctctg 542  Q
    || | | |||||||||    
T  18915263 tccgttgctttctctg 18915248  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 106
Target Start/End: Original strand, 26852251 - 26852316
Alignment:
Q  40 gccatttcatctccgccgaccccgtctccgattccgacctaacactttcttcttgctcaaatcagaa 106  Q
    |||||||||||||||||    ||||||| ||||| |||| |||||||||||||||||||||||||||    
T  26852251 gccatttcatctccgccacagccgtctctgattcagacc-aacactttcttcttgctcaaatcagaa 26852316  T

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Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 43 - 106
Target Start/End: Original strand, 55877102 - 55877165
Alignment:
Q  43 atttcatctccgccgaccccgtctccgattccgacctaacactttcttcttgctcaaatcagaa 106  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||    
T  55877102 atttcatctccgccgactccgtctccgattccgacccaacactttcttcttgctcaaattagaa 55877165  T

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Target: scaffold0093 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 106
Target Start/End: Original strand, 44049 - 44114
Alignment:
Q  40 gccatttcatctccgccgaccccgtctccgattccgacctaacactttcttcttgctcaaatcagaa 106  Q
    |||||||||||||||||    ||||||| ||||| |||| |||||||||||||||||||||||||||    
T  44049 gccatttcatctccgccacagccgtctctgattcagacc-aacactttcttcttgctcaaatcagaa 44114  T

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Target: scaffold0317 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 69 - 106
Target Start/End: Complemental strand, 19481 - 19444
Alignment:
Q  69 gattccgacctaacactttcttcttgctcaaatcagaa 106  Q
    |||||||||| |||||||||||||||||||||||||||    
T  19481 gattccgacccaacactttcttcttgctcaaatcagaa 19444  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 11394358 - 11394395
Alignment:
Q  69 gattccgacctaacactttcttcttgctcaaatcagaa 106  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  11394358 gattccaacccaacactttcttcttgctcaaatcagaa 11394395  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 106
Target Start/End: Complemental strand, 32440363 - 32440326
Alignment:
Q  69 gattccgacctaacactttcttcttgctcaaatcagaa 106  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  32440363 gattccaacccaacactttcttcttgctcaaatcagaa 32440326  T

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