View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3856_low_70 (Length: 237)
Name: NF3856_low_70
Description: NF3856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3856_low_70 |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 222
Target Start/End: Complemental strand, 35881840 - 35881634
Alignment:
| Q |
16 |
cagagagatcaagaatttgtaagtttgagatgtttttgagataaccccatgaaattgttccggttagatttttggagggaagaactattttggtgagatg |
115 |
Q |
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| T |
35881840 |
cagagagatcaagaatttgtaagtttgagatgtttttgagataaccccatgaaattgttccggttagatttttggagggaagaactattttggtgatatg |
35881741 |
T |
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| Q |
116 |
agagtttaaaattcttgtttggaataaggtggaagagttgaagccagaaacaaatttgaaagcttttgaaattaacaagatttggtgttcactgttgcat |
215 |
Q |
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| T |
35881740 |
agagtttgaaattcttgtttggaataaggtggaagagttgaagccagaaacaaatttgaaagcttttgaaattaacaagatttggtgtttactgttgcat |
35881641 |
T |
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| Q |
216 |
gaagatt |
222 |
Q |
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||||||| |
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| T |
35881640 |
gaagatt |
35881634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 222
Target Start/End: Complemental strand, 24456041 - 24455835
Alignment:
| Q |
16 |
cagagagatcaagaatttgtaagtttgagatgtttttgagataaccccatgaaattgttccggttagatttttggagggaagaactattttggtgagatg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
24456041 |
cagagagatcaagaatttgtaagtttgagatgtttttgagataaccccatgaaattgttccggttagatttttggagggaagaactattttggtgatatg |
24455942 |
T |
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| Q |
116 |
agagtttaaaattcttgtttggaataaggtggaagagttgaagccagaaacaaatttgaaagcttttgaaattaacaagatttggtgttcactgttgcat |
215 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
24455941 |
agagtttgaaattcttgtttggaataaggtggaagagttgaagccagaaacaaatttgaaagcttttgaaattaacaagatttggtgtttactgttgcat |
24455842 |
T |
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| Q |
216 |
gaagatt |
222 |
Q |
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||||||| |
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| T |
24455841 |
gaagatt |
24455835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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