View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3856_low_71 (Length: 236)
Name: NF3856_low_71
Description: NF3856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3856_low_71 |
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Alignment Details
Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 38490401 - 38490617
Alignment:
| Q |
1 |
aaggacagtcaaaccacctcacccactgctgaagcattataactttaaattnnnnnnnnnnnnnnnnnaacactacaaaacatagaaacataagcttaac |
100 |
Q |
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| T |
38490401 |
aaggacagtcacaccacctcacccactgctgaagcatcataactttaaattttattcttcttctta--aacgctacaaaacatagaa-cataagcttaac |
38490497 |
T |
|
| Q |
101 |
atagtatactgtctttcgattatagaacacaaaacatcagttattcttcttttctctttcaattacttgataatttcaacaattgtagttttggaatttg |
200 |
Q |
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| T |
38490498 |
atagtataccgtctttcgattatagaacacaaaacatcagttattcttcttttctctttcaattacttgataatttcaacaattgtagttttggaatttg |
38490597 |
T |
|
| Q |
201 |
gttaaagggttgttgaatca |
220 |
Q |
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|||||||||||||||||||| |
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| T |
38490598 |
gttaaagggttgttgaatca |
38490617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 121; Significance: 4e-62; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 72 - 220
Target Start/End: Complemental strand, 25247546 - 25247400
Alignment:
| Q |
72 |
actacaaaacatagaaacataagcttaacatagtatactgtctttcgattatagaacacaaaacatcagttattcttcttttctctttcaattacttgat |
171 |
Q |
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| T |
25247546 |
actacaaaacatagaa-cataagcttaacatagtatactgtctttcgattatagaacacaaaacatcagttattcttcttttctctttcaatgacttgat |
25247448 |
T |
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| Q |
172 |
aatttcaacaattgtagttttggaatttggttaaagggttgttgaatca |
220 |
Q |
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| T |
25247447 |
aatttcaac-atggtagttttgtaatttggttaaagggttgttgaatca |
25247400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 25247612 - 25247562
Alignment:
| Q |
1 |
aaggacagtcaaaccacctcacccactgctgaagcattataactttaaatt |
51 |
Q |
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| T |
25247612 |
aaggacagtcacaccacctcaccccctactgaagcattataactttaaatt |
25247562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 5021287 - 5021231
Alignment:
| Q |
162 |
attacttgataatttcaacaattgtagttttggaatttggttaaagggttgttgaat |
218 |
Q |
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| T |
5021287 |
attacttgaaaatttcgacaatggtagttttggaatttggtttaagtgttgttgaat |
5021231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 96 - 224
Target Start/End: Original strand, 37823585 - 37823713
Alignment:
| Q |
96 |
ttaacatagtatactgtctttcgattatagaacacaaaacatcagttattcttcttttctctttcaattacttgataatttcaacaattgtagttttgga |
195 |
Q |
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|||| ||||||||||||| || ||||| |||||||| ||||||| || || | |||||||| ||| |||||||||||||||| ||||| |||||||| || |
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| T |
37823585 |
ttaatatagtatactgtcatttgattacagaacacagaacatcaattcttatccttttctcgttccattacttgataatttcgacaatggtagttttaga |
37823684 |
T |
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| Q |
196 |
atttggttaaagggttgttgaatcatgat |
224 |
Q |
| |
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|||||| |||| |||||||||| ||||| |
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| T |
37823685 |
atttggctaaaatgttgttgaataatgat |
37823713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 10255526 - 10255491
Alignment:
| Q |
185 |
gtagttttggaatttggttaaagggttgttgaatca |
220 |
Q |
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| T |
10255526 |
gtagttttggaatttggttaaagtgttgttgaatca |
10255491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 33432895 - 33432839
Alignment:
| Q |
126 |
aacacaaaacatcagttattcttcttttctctttcaattacttgataatttcaacaa |
182 |
Q |
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|||||| ||||||| || ||||||||||||| || |||||||||||||||| |||| |
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| T |
33432895 |
aacacagaacatcaattcttcttcttttctcctttgattacttgataatttcgacaa |
33432839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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