View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3856_low_72 (Length: 235)

Name: NF3856_low_72
Description: NF3856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3856_low_72
NF3856_low_72
[»] chr5 (5 HSPs)
chr5 (1-222)||(11301181-11301403)
chr5 (123-222)||(10089462-10089561)
chr5 (1-91)||(10089290-10089380)
chr5 (167-222)||(10141142-10141197)
chr5 (184-220)||(10152780-10152816)


Alignment Details
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 11301403 - 11301181
Alignment:
Q  1 caatcatcatctaaccaaacaaccacaaggactaaatagtacccatagaaactttagcatccatcaagattaattgtaaattaaatattttttaatgaac 100  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  11301403 caatcatcatctaaccaaacaaccacaagaactaaatagtaaccatagaaactttagcatccatcaagattaattgcaaattaaatattttttaatgaac 11301304  T
Q  101 atttttatt-nnnnnnnnnnnnncttaaatagtcacatgctccccgcaaatattaaaagnnnnnnnnaaaataaatttaagcatacctctgatgaggtgt 199  Q
    |||||||||              ||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||    
T  11301303 atttttattaaaaaaaaaaaacacttaaatagtcacatgctccccgcaaatattaaaagttttttttaaaataaatttaagcatacctctgatgaggtgt 11301204  T
Q  200 agcattcaattgagagcagaaat 222  Q
    |||||||||||||||||||||||    
T  11301203 agcattcaattgagagcagaaat 11301181  T

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Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 123 - 222
Target Start/End: Original strand, 10089462 - 10089561
Alignment:
Q  123 cttaaatagtcacatgctccccgcaaatattaaaagnnnnnnnnaaaataaatttaagcatacctctgatgaggtgtagcattcaattgagagcagaaat 222  Q
    |||||||||||||||||||| |||||||||||||||         |||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  10089462 cttaaatagtcacatgctccacgcaaatattaaaagtattttttgaaataaacctaagcatacctctgatgaggtgtagcattcaattgagagcagaaat 10089561  T

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Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 10089290 - 10089380
Alignment:
Q  1 caatcatcatctaaccaaacaaccacaaggactaaatagtacccatagaaactttagcatccatcaagattaattgtaaattaaatatttt 91  Q
    |||||||||||||| ||||  ||||||||||||||||||||| | || |||||||||||||||||  |||||||||| |||| ||||||||    
T  10089290 caatcatcatctaaacaaatgaccacaaggactaaatagtactcgtaaaaactttagcatccatccggattaattgttaatttaatatttt 10089380  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 222
Target Start/End: Original strand, 10141142 - 10141197
Alignment:
Q  167 aaaataaatttaagcatacctctgatgaggtgtagcattcaattgagagcagaaat 222  Q
    ||||||||  ||| |||||||||| | |||||||||||||| ||||||||||||||    
T  10141142 aaaataaacataaacatacctctggtaaggtgtagcattcagttgagagcagaaat 10141197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 10152780 - 10152816
Alignment:
Q  184 acctctgatgaggtgtagcattcaattgagagcagaa 220  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  10152780 acctttgatgaggtgtggcattcaattgagagcagaa 10152816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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