View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3856_low_82 (Length: 211)
Name: NF3856_low_82
Description: NF3856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3856_low_82 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 4 - 195
Target Start/End: Original strand, 20851212 - 20851403
Alignment:
| Q |
4 |
acacaagtcaaaacggacattatgtgtagaaaataattacaatcagccatatatatataatacacaaaagagggaaaaacaaatgatattgatcctccac |
103 |
Q |
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| T |
20851212 |
acacaagtcaaaacggacattatgtgtagaaaataattacaatcagccatatatatataatacacaaaagagggaaaaacaaatgatattgatcctccac |
20851311 |
T |
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| Q |
104 |
agctgcagcgaacctctcttttctctttcaaaacatgatagagtgagaggcaagagaaaagtctttgcattgtcttcttcaagtgtcttttt |
195 |
Q |
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| T |
20851312 |
cgctgcagcgaacctctcttttctctttcaaaacatgatagagtgagaggcaagagaaaagtctttgcattgtcgtcttcaagtgtcttttt |
20851403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 40998799 - 40998913
Alignment:
| Q |
1 |
acaacacaagtcaaaacggacattatgtgtagaaaataattacaatcagccatat--atatataatacacaaaagagggaaaaacaaatgatattgatcc |
98 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40998799 |
acaaaacaagtcaaaacggacattatgtgtagaaaataattacaatcagccatatatatatataatacacaaaagagggaaaaacaaatgatattgatcc |
40998898 |
T |
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| Q |
99 |
tccacagctgcagcg |
113 |
Q |
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| T |
40998899 |
tccacagctgcagcg |
40998913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 111 - 195
Target Start/End: Original strand, 40998952 - 40999041
Alignment:
| Q |
111 |
gcgaacctctcttttctctttcaaaa-----catgatagagtgagaggcaagagaaaagtctttgcattgtcttcttcaagtgtcttttt |
195 |
Q |
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| T |
40998952 |
gcgaacctctcttttctctttcaaaattaaacatgatagagtgagaggcaagagaaaagtctttgcattgtcgtcttcaagtgtcttttt |
40999041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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