View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3856_low_83 (Length: 211)
Name: NF3856_low_83
Description: NF3856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3856_low_83 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 7009098 - 7009308
Alignment:
| Q |
1 |
ccctttagataggtacttttgtgaacaaggttactcaaagataaagaaatagataagaagtttcacctcctctactcaaactatacaacatcacacactt |
100 |
Q |
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| T |
7009098 |
ccctttagataggtacttttgtgaacaaggttactcaaagataaagaaatagataagaagtttcacctcctctactcaaactatacaacatcacacattt |
7009197 |
T |
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| Q |
101 |
tttaatacatgaatagtcatatatgtatttcaccattggatatatagcaagtttgagctgaagcatccatcaatcagtagaagcaaaagctgagtatttg |
200 |
Q |
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| T |
7009198 |
tttaatacatgaatagtcatatatgtatttcaccattggatatatagcaagtttgagctgaagcatccatcaatcagtagaagcaaaagctgagtacttg |
7009297 |
T |
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| Q |
201 |
aggaaaaatgg |
211 |
Q |
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| T |
7009298 |
aggaaaaatgg |
7009308 |
T |
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Target: chr6; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 7011404 - 7011481
Alignment:
| Q |
1 |
ccctttagataggtacttttgtgaacaaggttactcaaagataaagaaatagataagaagtttcacctcctctactca |
78 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| | |||||| |
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| T |
7011404 |
ccctttagataggtacttttgtgaacaaggttacttcaagataaagaaatagataagaagtttctcctcttttactca |
7011481 |
T |
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