View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3856_low_86 (Length: 209)

Name: NF3856_low_86
Description: NF3856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3856_low_86
NF3856_low_86
[»] chr3 (2 HSPs)
chr3 (144-192)||(1529894-1529942)
chr3 (71-116)||(1529966-1530011)
[»] chr5 (6 HSPs)
chr5 (146-192)||(22476778-22476824)
chr5 (71-115)||(26841739-26841783)
chr5 (74-115)||(22476708-22476749)
chr5 (148-192)||(26841669-26841713)
chr5 (72-112)||(29099045-29099085)
chr5 (1-56)||(22476637-22476692)


Alignment Details
Target: chr3 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 144 - 192
Target Start/End: Complemental strand, 1529942 - 1529894
Alignment:
Q  144 gaagaagagatacaatgcacaaatcgaccttgagatgaacataagtatc 192  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1529942 gaagaagagatacaatgcacaaatcgaccttgagatgaacataagtatc 1529894  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 1530011 - 1529966
Alignment:
Q  71 ctcaatttttagcacatagatcaaaaggggttttcaaataatcatt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  1530011 ctcaatttttagcacatagatcaaaaggggttttcaaataatcatt 1529966  T

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Target: chr5 (Bit Score: 47; Significance: 5e-18; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 146 - 192
Target Start/End: Original strand, 22476778 - 22476824
Alignment:
Q  146 agaagagatacaatgcacaaatcgaccttgagatgaacataagtatc 192  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  22476778 agaagagatacaatgcacaaatcgaccttgagatgaacataagtatc 22476824  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 26841783 - 26841739
Alignment:
Q  71 ctcaatttttagcacatagatcaaaaggggttttcaaataatcat 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  26841783 ctcaatttttagcacatagatcaaaaggggttttcaaataatcat 26841739  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 74 - 115
Target Start/End: Original strand, 22476708 - 22476749
Alignment:
Q  74 aatttttagcacatagatcaaaaggggttttcaaataatcat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  22476708 aatttttagcacatagatcaaaaggggttttcaaataatcat 22476749  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 26841713 - 26841669
Alignment:
Q  148 aagagatacaatgcacaaatcgaccttgagatgaacataagtatc 192  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  26841713 aagagatacaattcacaaatcgaccttgagatgaacataagtatc 26841669  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 112
Target Start/End: Complemental strand, 29099085 - 29099045
Alignment:
Q  72 tcaatttttagcacatagatcaaaaggggttttcaaataat 112  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  29099085 tcaatttttagcacatagatcaaaaggggtttccaaataat 29099045  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 22476637 - 22476692
Alignment:
Q  1 atgttaaaatagcaaaatttatcaaaataaaactacaagccagaattcaacaaacc 56  Q
    ||||| ||||||||| |||||||||| | ||||||||| ||||| |||||||||||    
T  22476637 atgtttaaatagcaatatttatcaaattcaaactacaatccagatttcaacaaacc 22476692  T

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