View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3856_low_9 (Length: 537)
Name: NF3856_low_9
Description: NF3856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3856_low_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 18 - 522
Target Start/End: Original strand, 40764057 - 40764561
Alignment:
| Q |
18 |
acttaaaaaggctaaacggaatgtatccaagctggaagaaagatctaaacttcagcccggtattcctcgaaaagatggaaaggtagattatgctaaagat |
117 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
40764057 |
acttaaaaaagctaaacggaatgtatccaagctggaagaaagatctaaacttcagcccagtattcctcgaaaggatggaaagatagattatgctaaagat |
40764156 |
T |
|
| Q |
118 |
ttctttgcccgtcaagcatttttgactgtttctggtcagcttcaagttgagtcttatgcgtgtgctcttagtagtgtgtatacatttggcccaacatttc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40764157 |
ttctttgcccgtcaagcatttttgactgtttctggtcagcttcaagttgagtcttatgcgtgtgctcttagtagtgtgtatacatttggcccaacatttc |
40764256 |
T |
|
| Q |
218 |
gtgcagagaattctcacacttccaggcatttggctgaattttggatggtagaacctgaaattgcgtttgcagacttggaggtatataaaaaggaacacac |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40764257 |
gtgcagagaattctcacacttccaggcatttggctgaattttggatggtagaacctgaaattgcgtttgcagacttggaggtatataaaaaggaacacac |
40764356 |
T |
|
| Q |
318 |
tatctggttatgattattctcatctatagctgtttgaagttttttgaaatacaatgttttctcacacctttctccctatcaaattagtcactattaacca |
417 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40764357 |
tatctggttatgattattctcatcgatagctgtttgaagttttttgaaatacaatgttttctcacacctttctccctatcaaattagtcactattaaccc |
40764456 |
T |
|
| Q |
418 |
cattatcagctgaatgccaattcaaatactttgttttttatggtaataaacttatttttctagtgcgtgcaatcttgaactgccaacttcactcctactc |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40764457 |
cattatcagctgaatgccaattcaaatactttgttttttagggtaataaacttatttttttagtgcgtgcaatcttgaactgccaacttcactcctactc |
40764556 |
T |
|
| Q |
518 |
ctatg |
522 |
Q |
| |
|
||||| |
|
|
| T |
40764557 |
ctatg |
40764561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 37 - 339
Target Start/End: Original strand, 42911723 - 42912029
Alignment:
| Q |
37 |
aatgtatccaagctggaagaaagatctaaacttcagcccggtattcctcgaaaagatggaaaggtagattatgctaaagatttctttgcccgtcaagcat |
136 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||| |||||| ||||||||||||||||||||||||| | |
|
|
| T |
42911723 |
aatgtatccaagctggaggaaagatctaaacttcagcccggtattcctcgaaaggacggaaaggtggattatactaaagatttctttgcccgtcaagcgt |
42911822 |
T |
|
| Q |
137 |
ttttgactgtttctggtcagcttcaagttgagtcttatgcgtgtgctcttagtagtgtgtatacatttggcccaacatttcgtgcagagaattctcacac |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
42911823 |
ttttgactgtttctggtcagcttcaagttgagtcttatgcttgtgctcttagtcgcgtgtatacatttggcccgacatttcgtgcagagaattctcacac |
42911922 |
T |
|
| Q |
237 |
ttccaggcatttggctgaattttggatggtagaacctgaaattgcgtttgcagacttggaggtatataaaaaggaacacact----atctggttatgatt |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||| |
|
|
| T |
42911923 |
ttccaggcatttggctgaattttggatggtagaacctgaaattgcgtttgcagacttggaggtatataaaaatgaacacacactcaatcttgttatgatt |
42912022 |
T |
|
| Q |
333 |
attctca |
339 |
Q |
| |
|
||||||| |
|
|
| T |
42912023 |
attctca |
42912029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 372 - 522
Target Start/End: Original strand, 42912038 - 42912182
Alignment:
| Q |
372 |
tgttttctcacacctttctccctatcaaattagtcactattaaccacattatcagctgaatgccaattcaaatactttgttttttatggtaataaactta |
471 |
Q |
| |
|
|||||||||||| |||| | ||||||||||| | |||||||||||||||| ||||| || ||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
42912038 |
tgttttctcacatctttaacgctatcaaattatttgttattaaccacattatcggctgagtgtcaattcaaatact--gttttttagggtaataaactta |
42912135 |
T |
|
| Q |
472 |
tttttctagtgcgtgcaatcttgaactgccaacttcactcctactcctatg |
522 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
42912136 |
tttttctagtgc----aatcttgaactgccaacttcacccctactcctatg |
42912182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 193 - 261
Target Start/End: Complemental strand, 41661999 - 41661931
Alignment:
| Q |
193 |
gtgtatacatttggcccaacatttcgtgcagagaattctcacacttccaggcatttggctgaattttgg |
261 |
Q |
| |
|
|||||||||||||| || |||||||| |||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
41661999 |
gtgtatacatttggtcccacatttcgagcagagaattctaacacttccaggcacttggctgaattttgg |
41661931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University