View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3857_high_19 (Length: 440)

Name: NF3857_high_19
Description: NF3857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3857_high_19
NF3857_high_19
[»] chr8 (12 HSPs)
chr8 (9-421)||(43907573-43907985)
chr8 (311-421)||(4558682-4558792)
chr8 (326-418)||(34563137-34563229)
chr8 (305-381)||(40280275-40280351)
chr8 (329-421)||(44865659-44865751)
chr8 (312-397)||(29699162-29699247)
chr8 (305-340)||(33553227-33553262)
chr8 (311-342)||(42237498-42237529)
chr8 (311-341)||(35374449-35374479)
chr8 (312-340)||(773294-773322)
chr8 (312-340)||(778354-778382)
chr8 (312-340)||(787788-787816)
[»] chr2 (12 HSPs)
chr2 (320-418)||(31461325-31461423)
chr2 (311-384)||(32633693-32633765)
chr2 (316-421)||(33197320-33197425)
chr2 (311-421)||(11393441-11393552)
chr2 (311-421)||(11410102-11410213)
chr2 (311-390)||(28803582-28803661)
chr2 (315-354)||(42457899-42457938)
chr2 (305-343)||(3227731-3227769)
chr2 (311-381)||(10150679-10150749)
chr2 (311-382)||(31228893-31228966)
chr2 (311-384)||(3673728-3673801)
chr2 (305-341)||(750460-750496)
[»] chr7 (7 HSPs)
chr7 (330-422)||(6552365-6552457)
chr7 (316-375)||(21853197-21853256)
chr7 (305-382)||(7244625-7244702)
chr7 (305-342)||(34035902-34035939)
chr7 (369-421)||(5630049-5630101)
chr7 (314-342)||(30180014-30180042)
chr7 (305-357)||(33601163-33601215)
[»] chr1 (15 HSPs)
chr1 (310-390)||(45234112-45234192)
chr1 (311-421)||(17269135-17269244)
chr1 (305-342)||(14737775-14737812)
chr1 (305-342)||(48748653-48748690)
chr1 (311-363)||(11211060-11211112)
chr1 (378-421)||(21516257-21516300)
chr1 (315-353)||(15477530-15477568)
chr1 (368-418)||(24153164-24153214)
chr1 (305-342)||(50319255-50319292)
chr1 (374-418)||(37236-37280)
chr1 (315-343)||(8081849-8081877)
chr1 (273-301)||(17631039-17631067)
chr1 (305-337)||(29834953-29834985)
chr1 (368-408)||(36602687-36602727)
chr1 (315-343)||(47002954-47002982)
[»] chr6 (9 HSPs)
chr6 (311-358)||(10728579-10728626)
chr6 (311-397)||(10749304-10749389)
chr6 (310-422)||(6078364-6078476)
chr6 (326-417)||(5328862-5328953)
chr6 (305-342)||(2205638-2205675)
chr6 (305-342)||(5731555-5731592)
chr6 (314-374)||(264302-264362)
chr6 (314-342)||(9093635-9093663)
chr6 (314-358)||(9559620-9559664)
[»] chr5 (10 HSPs)
chr5 (311-421)||(9202824-9202934)
chr5 (311-342)||(12595816-12595847)
chr5 (312-342)||(10363713-10363743)
chr5 (314-344)||(12425532-12425562)
chr5 (305-342)||(12242758-12242795)
chr5 (328-421)||(26516182-26516275)
chr5 (314-342)||(11835240-11835268)
chr5 (311-419)||(35135738-35135846)
chr5 (305-408)||(37611263-37611364)
chr5 (305-408)||(37787993-37788094)
[»] scaffold0024 (2 HSPs)
scaffold0024 (311-421)||(27460-27570)
scaffold0024 (314-342)||(21357-21385)
[»] chr4 (7 HSPs)
chr4 (247-302)||(25487466-25487521)
chr4 (313-358)||(49803158-49803203)
chr4 (369-421)||(4684243-4684295)
chr4 (314-342)||(25885822-25885850)
chr4 (311-383)||(30024622-30024694)
chr4 (306-342)||(43505919-43505955)
chr4 (305-341)||(52294036-52294072)
[»] chr3 (8 HSPs)
chr3 (315-358)||(849609-849652)
chr3 (311-342)||(10101552-10101583)
chr3 (311-342)||(10212477-10212508)
chr3 (311-342)||(15304423-15304454)
chr3 (326-417)||(54775016-54775107)
chr3 (311-381)||(3182438-3182508)
chr3 (368-421)||(20874433-20874486)
chr3 (328-396)||(16790181-16790249)
[»] scaffold0590 (1 HSPs)
scaffold0590 (326-420)||(1165-1259)
[»] scaffold0275 (1 HSPs)
scaffold0275 (326-420)||(2716-2810)


Alignment Details
Target: chr8 (Bit Score: 397; Significance: 0; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 9 - 421
Target Start/End: Original strand, 43907573 - 43907985
Alignment:
Q  9 gaagaatatgattgttccgaaacattgtctatgcatcaatcgccgcaagtttctgacttcgaaaataaagagatgggagcgtttcaagaaaactttcaat 108  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  43907573 gaagaaaatgattgttccgaaacattgtctatgcatcaatcgccgcaagtttctgacttcgaaaataaagaggtgggagcgtttcaagaaaactttcaat 43907672  T
Q  109 caagaaatgttgttgattctgttccaaattatgttgaatttgaaagcagccccacctcttccatgatcaacctgaacctatataaaagtaacagacacca 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43907673 caagaaatgttgttgattctgttccaaattatgttgaatttgaaagcagccccacctcttccatgatcaacctgaacctatataaaagtaacagacacca 43907772  T
Q  209 taacggtatttcacaccatatctcattttataatctatactataggcctattttgattaactcatttgagtttatctattgacataaacacttgacatag 308  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43907773 taacggtatttcacaccgtatctcattttataatctatactataggcctattttgattaactcatttgagtttatctattgacataaacacttgacatag 43907872  T
Q  309 cttatgaaaacaatttaactttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaacatttatgatataagggtttaattaa 408  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43907873 cttatgaaaacaatttgactttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaacatttatgatataagggtttaattaa 43907972  T
Q  409 gatgtttatccaa 421  Q
    |||||||||||||    
T  43907973 gatgtttatccaa 43907985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 311 - 421
Target Start/End: Complemental strand, 4558792 - 4558682
Alignment:
Q  311 tatgaaaacaatttaactttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaacatttatgatataagggtttaattaaga 410  Q
    |||||||| ||||||||||||||||||||||||   |||||||| ||| ||  ||| |||||| || |||||| |||||| |||||| |  ||||||||     
T  4558792 tatgaaaataatttaactttattttatcttttattatagaaatagcttatacataaacacttacataataaacgtttatgctataagcgcgtaattaagt 4558693  T
Q  411 tgtttatccaa 421  Q
    |||||||||||    
T  4558692 tgtttatccaa 4558682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 326 - 418
Target Start/End: Complemental strand, 34563229 - 34563137
Alignment:
Q  326 actttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaacatttatgatataagggtttaattaagatgtttatc 418  Q
    ||||||||||||| |||    |||||||||||| ||| ||| |||||||||||||||  |||||| |||||| ||||||||||| ||||||||    
T  34563229 actttattttatcctttgtcatagaaataacttatatataagcacttatatgataaatgtttatgctataagcgtttaattaagttgtttatc 34563137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 305 - 381
Target Start/End: Original strand, 40280275 - 40280351
Alignment:
Q  305 atagcttatgaaaacaatttaactttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataa 381  Q
    |||||||||||||||||||| |||||||||||||||||    |||||||||||| ||| ||  ||||||||||||||    
T  40280275 atagcttatgaaaacaattttactttattttatcttttgttgtagaaataacttatatataggcacttatatgataa 40280351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 329 - 421
Target Start/End: Original strand, 44865659 - 44865751
Alignment:
Q  329 ttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaacatttatgatataagggtttaattaagatgtttatccaa 421  Q
    |||||| ||||||| || |||||||| ||| || |||| |||||||| ||||||| || ||| ||||||  |||||||||| |||||||||||    
T  44865659 ttatttaatcttttgcgatagaaatagcttataagtaagcacttataagataaactttaatgctataagcatttaattaagttgtttatccaa 44865751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 312 - 397
Target Start/End: Complemental strand, 29699247 - 29699162
Alignment:
Q  312 atgaaaacaatttaactttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaacatttatgatataag 397  Q
    |||| |||| ||| |||||||||||||||||    |||||||||||||||  ||| || |||||||||||| ||||||| ||||||    
T  29699247 atgacaacattttgactttattttatcttttgttatagaaataacttgtacataagcatttatatgataaatatttatgctataag 29699162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 340
Target Start/End: Complemental strand, 33553262 - 33553227
Alignment:
Q  305 atagcttatgaaaacaatttaactttattttatctt 340  Q
    |||||||||||||||||||| |||||||||||||||    
T  33553262 atagcttatgaaaacaatttgactttattttatctt 33553227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 342
Target Start/End: Original strand, 42237498 - 42237529
Alignment:
Q  311 tatgaaaacaatttaactttattttatctttt 342  Q
    ||||||||||||||||||||||||||||||||    
T  42237498 tatgaaaacaatttaactttattttatctttt 42237529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 341
Target Start/End: Original strand, 35374449 - 35374479
Alignment:
Q  311 tatgaaaacaatttaactttattttatcttt 341  Q
    |||||||||||||||||||||||||||||||    
T  35374449 tatgaaaacaatttaactttattttatcttt 35374479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 340
Target Start/End: Complemental strand, 773322 - 773294
Alignment:
Q  312 atgaaaacaatttaactttattttatctt 340  Q
    |||||||||||||||||||||||||||||    
T  773322 atgaaaacaatttaactttattttatctt 773294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 340
Target Start/End: Complemental strand, 778382 - 778354
Alignment:
Q  312 atgaaaacaatttaactttattttatctt 340  Q
    |||||||||||||||||||||||||||||    
T  778382 atgaaaacaatttaactttattttatctt 778354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 340
Target Start/End: Complemental strand, 787816 - 787788
Alignment:
Q  312 atgaaaacaatttaactttattttatctt 340  Q
    |||||||||||||||||||||||||||||    
T  787816 atgaaaacaatttaactttattttatctt 787788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 320 - 418
Target Start/End: Complemental strand, 31461423 - 31461325
Alignment:
Q  320 aatttaactttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaacatttatgatataagggtttaattaagatgtttatc 418  Q
    ||||| |||||||||||||||||    |||||||| ||| ||| ||||||||||||||||| || |||||| || ||| | ||||||||| ||||||||    
T  31461423 aatttgactttattttatcttttgttatagaaatagcttatatataaccacttatatgatatacgtttatgctagaagtgcttaattaagttgtttatc 31461325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 311 - 384
Target Start/End: Original strand, 32633693 - 32633765
Alignment:
Q  311 tatgaaaacaatttaactttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaaca 384  Q
    |||||||||||||| | |||| |||||||||| |  |||||||||||  |||||||||| ||||||||||||||    
T  32633693 tatgaaaacaatttgattttagtttatctttt-ctatagaaataactcatatgtaaccaattatatgataaaca 32633765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 316 - 421
Target Start/End: Original strand, 33197320 - 33197425
Alignment:
Q  316 aaacaatttaactttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaacatttatgatataagggtttaattaagatgttt 415  Q
    |||||| || |||||||| ||||||||    |||||||| ||| ||  ||| |||||||||||||| | |||||| |||||| |||||||| || |||||    
T  33197320 aaacaacttgactttattctatcttttgttatagaaatagcttatagataagcacttatatgataagcgtttatgttataagtgtttaatttagttgttt 33197419  T
Q  416 atccaa 421  Q
    ||||||    
T  33197420 atccaa 33197425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 421
Target Start/End: Original strand, 11393441 - 11393552
Alignment:
Q  311 tatgaaaac-aatttaactttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaacatttatgatataagggtttaattaag 409  Q
    ||||||||| ||||| | |||||| ||||||||    |||||||| ||| ||  ||| ||||||||||||||||| || || |||||| | |||||||||    
T  11393441 tatgaaaacgaatttgaatttattatatcttttgatatagaaatagcttatagataagcacttatatgataaacacttgtgctataagtgcttaattaag 11393540  T
Q  410 atgtttatccaa 421  Q
     |||||||||||    
T  11393541 ctgtttatccaa 11393552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 421
Target Start/End: Original strand, 11410102 - 11410213
Alignment:
Q  311 tatgaaaac-aatttaactttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaacatttatgatataagggtttaattaag 409  Q
    ||||||||| ||||| | |||||| ||||||||    |||||||| ||| ||  ||| ||||||||||||||||| || || |||||| | |||||||||    
T  11410102 tatgaaaacgaatttgaatttattatatcttttgatatagaaatagcttatagataagcacttatatgataaacacttgtgctataagtgcttaattaag 11410201  T
Q  410 atgtttatccaa 421  Q
     |||||||||||    
T  11410202 ctgtttatccaa 11410213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 390
Target Start/End: Original strand, 28803582 - 28803661
Alignment:
Q  311 tatgaaaacaatttaactttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaacatttatg 390  Q
    ||||||| || ||| |||||||||||||||||    | |||||||||| ||| ||| |||||||||||||| ||||||||    
T  28803582 tatgaaatcagtttgactttattttatcttttgttatcgaaataacttatatataagcacttatatgataagcatttatg 28803661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 354
Target Start/End: Complemental strand, 42457938 - 42457899
Alignment:
Q  315 aaaacaatttaactttattttatcttttacgctagaaata 354  Q
    ||||||||||||||||||||||||||||||  ||||||||    
T  42457938 aaaacaatttaactttattttatcttttactatagaaata 42457899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 343
Target Start/End: Original strand, 3227731 - 3227769
Alignment:
Q  305 atagcttatgaaaacaatttaactttattttatctttta 343  Q
    |||||||||||||||||||||||||| |||||| |||||    
T  3227731 atagcttatgaaaacaatttaactttgttttatttttta 3227769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 381
Target Start/End: Complemental strand, 10150749 - 10150679
Alignment:
Q  311 tatgaaaacaatttaactttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataa 381  Q
    ||||||||| ||||||| |||||||||||||||   |||||||||||| ||  ||| ||||||||| ||||    
T  10150749 tatgaaaaccatttaacgttattttatcttttattatagaaataacttatacataaacacttatataataa 10150679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 382
Target Start/End: Original strand, 31228893 - 31228966
Alignment:
Q  311 tatgaaaacaatttaactttattttatcttttacgc--tagaaataacttgtatgtaaccacttatatgataaa 382  Q
    ||||||||||||||  ||||||||||||||||  ||  |||||||||| |||   |||||||||||||||||||    
T  31228893 tatgaaaacaatttgcctttattttatcttttgagctatagaaataacatgtgcataaccacttatatgataaa 31228966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 384
Target Start/End: Complemental strand, 3673801 - 3673728
Alignment:
Q  311 tatgaaaacaatttaactttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaaca 384  Q
    ||||||||||||||||||||||||||| ||||    |||||||||||  ||  ||| ||||||||||| |||||    
T  3673801 tatgaaaacaatttaactttattttatattttgttatagaaataactaatacataagcacttatatgacaaaca 3673728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 341
Target Start/End: Complemental strand, 750496 - 750460
Alignment:
Q  305 atagcttatgaaaacaatttaactttattttatcttt 341  Q
    |||||||||||| |||||||||| |||||||||||||    
T  750496 atagcttatgaagacaatttaacattattttatcttt 750460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 330 - 422
Target Start/End: Original strand, 6552365 - 6552457
Alignment:
Q  330 tattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaacatttatgatataagggtttaattaagatgtttatccaat 422  Q
    |||||||||||||    |||||||||||||||  ||| ||||||||||||||  | ||||||| |||| ||||||||||| || |||||||||    
T  6552365 tattttatcttttgttgtagaaataacttgtacataagcacttatatgataagtacttatgatttaagtgtttaattaagttgcttatccaat 6552457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 375
Target Start/End: Original strand, 21853197 - 21853256
Alignment:
Q  316 aaacaatttaactttattttatcttttacgctagaaataacttgtatgtaaccacttata 375  Q
    |||||||||||||||||||||||||||    |||||||||||| ||| ||| ||||||||    
T  21853197 aaacaatttaactttattttatcttttgtaatagaaataacttatatataatcacttata 21853256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 382
Target Start/End: Complemental strand, 7244702 - 7244625
Alignment:
Q  305 atagcttatgaaaacaatttaactttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaa 382  Q
    |||||||||||||||| ||| ||||| |||||||||||    |||||||| ||| ||  ||| |||||||||||||||    
T  7244702 atagcttatgaaaacagtttgactttcttttatcttttgatatagaaatagcttatacataagcacttatatgataaa 7244625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 342
Target Start/End: Complemental strand, 34035939 - 34035902
Alignment:
Q  305 atagcttatgaaaacaatttaactttattttatctttt 342  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  34035939 atagcttatgaaaacaatttaactttatattatttttt 34035902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 421
Target Start/End: Original strand, 5630049 - 5630101
Alignment:
Q  369 acttatatgataaacatttatgatataagggtttaattaagatgtttatccaa 421  Q
    |||||||||||||||| ||||  |||||||  ||||||||| |||||||||||    
T  5630049 acttatatgataaacacttattctataaggacttaattaagttgtttatccaa 5630101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 342
Target Start/End: Complemental strand, 30180042 - 30180014
Alignment:
Q  314 gaaaacaatttaactttattttatctttt 342  Q
    |||||||||||||||||||||||||||||    
T  30180042 gaaaacaatttaactttattttatctttt 30180014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 357
Target Start/End: Original strand, 33601163 - 33601215
Alignment:
Q  305 atagcttatgaaaacaatttaactttattttatcttttacgctagaaataact 357  Q
    |||||||||||||||| ||| |||||||||||| |||||   |||||||||||    
T  33601163 atagcttatgaaaacagtttgactttattttattttttagtgtagaaataact 33601215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 310 - 390
Target Start/End: Complemental strand, 45234192 - 45234112
Alignment:
Q  310 ttatgaaaacaatttaactttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaacatttatg 390  Q
    ||||||||| ||||| ||||||||||||||||||   |||||||||| ||||   || |||| ||||||||||||||||||    
T  45234192 ttatgaaaataatttgactttattttatcttttattatagaaataacatgtacaaaagcactcatatgataaacatttatg 45234112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 421
Target Start/End: Complemental strand, 17269244 - 17269135
Alignment:
Q  311 tatgaaaacaatttaactttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaacatttatgatataagggtttaattaaga 410  Q
    |||||||||||||| ||||||||||  |||||   ||||||||||||| ||  ||| ||||||||||| |||| |||||||||| ||  |||||| |||     
T  17269244 tatgaaaacaatttgactttattttcacttttgttctagaaataacttatacataagcacttatatga-aaacgtttatgatatcagtatttaatcaagt 17269146  T
Q  411 tgtttatccaa 421  Q
    || ||||||||    
T  17269145 tgcttatccaa 17269135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 305 - 342
Target Start/End: Original strand, 14737775 - 14737812
Alignment:
Q  305 atagcttatgaaaacaatttaactttattttatctttt 342  Q
    |||||||||||||||||||| |||||||||||||||||    
T  14737775 atagcttatgaaaacaatttgactttattttatctttt 14737812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 305 - 342
Target Start/End: Original strand, 48748653 - 48748690
Alignment:
Q  305 atagcttatgaaaacaatttaactttattttatctttt 342  Q
    |||||||||||||||||||||||||||||| |||||||    
T  48748653 atagcttatgaaaacaatttaactttatttcatctttt 48748690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 363
Target Start/End: Complemental strand, 11211112 - 11211060
Alignment:
Q  311 tatgaaaacaatttaactttattttatcttttacgctagaaataacttgtatg 363  Q
    |||||||| |||||||||||||||||||||||   ||||||||||||| ||||    
T  11211112 tatgaaaaaaatttaactttattttatcttttgttctagaaataacttatatg 11211060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 421
Target Start/End: Complemental strand, 21516300 - 21516257
Alignment:
Q  378 ataaacatttatgatataagggtttaattaagatgtttatccaa 421  Q
    ||||||||||||| |||||| ||||||||||| |||||||||||    
T  21516300 ataaacatttatgttataagcgtttaattaagttgtttatccaa 21516257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 353
Target Start/End: Complemental strand, 15477568 - 15477530
Alignment:
Q  315 aaaacaatttaactttattttatcttttacgctagaaat 353  Q
    ||||||||||||||||||||||||||||||  |||||||    
T  15477568 aaaacaatttaactttattttatcttttactatagaaat 15477530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 418
Target Start/End: Complemental strand, 24153214 - 24153164
Alignment:
Q  368 cacttatatgataaacatttatgatataagggtttaattaagatgtttatc 418  Q
    |||| ||||||||||||| |||| |||||| ||||||||||| ||||||||    
T  24153214 cactcatatgataaacatatatgttataagtgtttaattaagttgtttatc 24153164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 342
Target Start/End: Complemental strand, 50319292 - 50319255
Alignment:
Q  305 atagcttatgaaaacaatttaactttattttatctttt 342  Q
    ||||||||||||||||| || |||||||||||||||||    
T  50319292 atagcttatgaaaacaacttgactttattttatctttt 50319255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 418
Target Start/End: Complemental strand, 37280 - 37236
Alignment:
Q  374 tatgataaacatttatgatataagggtttaattaagatgtttatc 418  Q
    ||||||||||||||||| ||||||  |||||||||| ||||||||    
T  37280 tatgataaacatttatgttataagcatttaattaagctgtttatc 37236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 343
Target Start/End: Complemental strand, 8081877 - 8081849
Alignment:
Q  315 aaaacaatttaactttattttatctttta 343  Q
    |||||||||||||||||||||||||||||    
T  8081877 aaaacaatttaactttattttatctttta 8081849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 301
Target Start/End: Original strand, 17631039 - 17631067
Alignment:
Q  273 tttgagtttatctattgacataaacactt 301  Q
    |||||||||||||||||||||||||||||    
T  17631039 tttgagtttatctattgacataaacactt 17631067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 337
Target Start/End: Original strand, 29834953 - 29834985
Alignment:
Q  305 atagcttatgaaaacaatttaactttattttat 337  Q
    |||||||||||||||||||| ||||||||||||    
T  29834953 atagcttatgaaaacaatttgactttattttat 29834985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 408
Target Start/End: Complemental strand, 36602727 - 36602687
Alignment:
Q  368 cacttatatgataaacatttatgatataagggtttaattaa 408  Q
    ||||||||||||||| |||||||||||||| | ||||||||    
T  36602727 cacttatatgataaaaatttatgatataagtgcttaattaa 36602687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 343
Target Start/End: Original strand, 47002954 - 47002982
Alignment:
Q  315 aaaacaatttaactttattttatctttta 343  Q
    |||||||||||||||||||||||||||||    
T  47002954 aaaacaatttaactttattttatctttta 47002982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 311 - 358
Target Start/End: Complemental strand, 10728626 - 10728579
Alignment:
Q  311 tatgaaaacaatttaactttattttatcttttacgctagaaataactt 358  Q
    |||||||||||||||||||||||||||||||| |  ||||||||||||    
T  10728626 tatgaaaacaatttaactttattttatcttttgctttagaaataactt 10728579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 397
Target Start/End: Original strand, 10749304 - 10749389
Alignment:
Q  311 tatgaaaacaatttaactttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaacatttatgatataag 397  Q
    |||||||| ||||||||||||||||||||||||   ||||||| |||| ||  ||||  ||||||||||||||  ||||||||||||    
T  10749304 tatgaaaataatttaactttattttatcttttattatagaaat-acttatacataacatcttatatgataaacgcttatgatataag 10749389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 422
Target Start/End: Original strand, 6078364 - 6078476
Alignment:
Q  310 ttatgaaaacaatttaactttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaacatttatgatataagggtttaattaag 409  Q
    ||||||||||||||| ||||||||||| ||| |  | |||||||| ||  || |||||||| | |||||||| |  ||||| |||||  | |||||||||    
T  6078364 ttatgaaaacaatttgactttattttaccttctgtgatagaaatagctcatacgtaaccacatgtatgataagcgcttatgttataaccgcttaattaag 6078463  T
Q  410 atgtttatccaat 422  Q
     ||||||||||||    
T  6078464 ttgtttatccaat 6078476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 417
Target Start/End: Complemental strand, 5328953 - 5328862
Alignment:
Q  326 actttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaacatttatgatataagggtttaattaagatgtttat 417  Q
    |||||||||||||||||    ||||||||||||  | |||| ||||| |||||||| |||||||| |||| | | ||||||||| |||||||    
T  5328953 actttattttatcttttgttatagaaataacttaaacgtaagcacttttatgataatcatttatgctatatgtggttaattaagctgtttat 5328862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 342
Target Start/End: Original strand, 2205638 - 2205675
Alignment:
Q  305 atagcttatgaaaacaatttaactttattttatctttt 342  Q
    |||||||||||||||||||| ||||| |||||||||||    
T  2205638 atagcttatgaaaacaatttgactttgttttatctttt 2205675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 342
Target Start/End: Complemental strand, 5731592 - 5731555
Alignment:
Q  305 atagcttatgaaaacaatttaactttattttatctttt 342  Q
    |||||||||||||||||||| |||| ||||||||||||    
T  5731592 atagcttatgaaaacaatttgacttcattttatctttt 5731555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 374
Target Start/End: Complemental strand, 264362 - 264302
Alignment:
Q  314 gaaaacaatttaactttattttatcttttacgctagaaataacttgtatgtaaccacttat 374  Q
    |||||| |||||||||||||||||||||| |  |||||||| ||| ||| ||| |||||||    
T  264362 gaaaacgatttaactttattttatcttttgctttagaaatagcttatatataagcacttat 264302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 342
Target Start/End: Original strand, 9093635 - 9093663
Alignment:
Q  314 gaaaacaatttaactttattttatctttt 342  Q
    |||||||||||||||||||||||||||||    
T  9093635 gaaaacaatttaactttattttatctttt 9093663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 358
Target Start/End: Original strand, 9559620 - 9559664
Alignment:
Q  314 gaaaacaatttaactttattttatcttttacgctagaaataactt 358  Q
    ||||||||||||| ||||||||||||||| |  ||||||||||||    
T  9559620 gaaaacaatttaaatttattttatcttttgctatagaaataactt 9559664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 311 - 421
Target Start/End: Original strand, 9202824 - 9202934
Alignment:
Q  311 tatgaaaacaatttaactttattttatcttttacgctagaaataacttgtatgtaaccacttat-atgataaacatttatgatataagggtttaattaag 409  Q
    |||||||||||||||||||||||||||||||| |   ||||||| ||| ||| ||| ||||||| |||||||||| || || ||||||  |  || ||||    
T  9202824 tatgaaaacaatttaactttattttatcttttgctacagaaatagcttatatataagcacttatcatgataaacacttgtgctataagc-tgcaaataag 9202922  T
Q  410 atgtttatccaa 421  Q
    ||||||||||||    
T  9202923 atgtttatccaa 9202934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 342
Target Start/End: Original strand, 12595816 - 12595847
Alignment:
Q  311 tatgaaaacaatttaactttattttatctttt 342  Q
    ||||||||||||||||||||||||||||||||    
T  12595816 tatgaaaacaatttaactttattttatctttt 12595847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 342
Target Start/End: Complemental strand, 10363743 - 10363713
Alignment:
Q  312 atgaaaacaatttaactttattttatctttt 342  Q
    |||||||||||||||||||||||||||||||    
T  10363743 atgaaaacaatttaactttattttatctttt 10363713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 344
Target Start/End: Complemental strand, 12425562 - 12425532
Alignment:
Q  314 gaaaacaatttaactttattttatcttttac 344  Q
    |||||||||||||||||||||||||||||||    
T  12425562 gaaaacaatttaactttattttatcttttac 12425532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 342
Target Start/End: Original strand, 12242758 - 12242795
Alignment:
Q  305 atagcttatgaaaacaatttaactttattttatctttt 342  Q
    |||||||||||||||||||| ||| |||||||||||||    
T  12242758 atagcttatgaaaacaatttgactctattttatctttt 12242795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 421
Target Start/End: Complemental strand, 26516275 - 26516182
Alignment:
Q  328 tttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaacatttatgatataagggtttaattaagatgtttatccaa 421  Q
    |||||||||||||||    |||||||| ||| ||  ||| |||||||||||||| |  ||||| |||||| | ||||||||| |||||||||||    
T  26516275 tttattttatcttttgttttagaaatagcttatacataagcacttatatgataagcgcttatgctataagcgcttaattaagttgtttatccaa 26516182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 342
Target Start/End: Complemental strand, 11835268 - 11835240
Alignment:
Q  314 gaaaacaatttaactttattttatctttt 342  Q
    |||||||||||||||||||||||||||||    
T  11835268 gaaaacaatttaactttattttatctttt 11835240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 419
Target Start/End: Original strand, 35135738 - 35135846
Alignment:
Q  311 tatgaaaacaatttaactttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaacatttatgatataagggtttaattaaga 410  Q
    |||||||| | ||| |||||||||||||||||    |||||||| ||| ||  ||| |||||||||| ||| || ||||| ||| || ||| |||||||     
T  35135738 tatgaaaatagtttgactttattttatcttttgttatagaaatatcttatacataaacacttatatgttaagcacttatgctatgagtgttgaattaagt 35135837  T
Q  411 tgtttatcc 419  Q
    |||||||||    
T  35135838 tgtttatcc 35135846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 408
Target Start/End: Original strand, 37611263 - 37611364
Alignment:
Q  305 atagcttatgaaaacaatttaactttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaacatttatgatataagggtttaa 404  Q
    |||||||||||||||||||| | || |||||  ||||||   |||||||| ||| ||  ||| ||||||||||| || |||||||| |||||| | ||||    
T  37611263 atagcttatgaaaacaatttgatttgatttt--cttttattatagaaatagcttttacataagcacttatatgacaaccatttatgctataagtgcttaa 37611360  T
Q  405 ttaa 408  Q
    ||||    
T  37611361 ttaa 37611364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 408
Target Start/End: Original strand, 37787993 - 37788094
Alignment:
Q  305 atagcttatgaaaacaatttaactttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaacatttatgatataagggtttaa 404  Q
    |||||||||||||||||||| | || |||||  ||||||   |||||||| ||| ||  ||| ||||||||||| || |||||||| |||||| | ||||    
T  37787993 atagcttatgaaaacaatttgatttgatttt--cttttattatagaaatagcttttacataagcacttatatgacaaccatttatgctataagtgcttaa 37788090  T
Q  405 ttaa 408  Q
    ||||    
T  37788091 ttaa 37788094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 421
Target Start/End: Complemental strand, 27570 - 27460
Alignment:
Q  311 tatgaaaacaatttaactttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaacatttatgatataagggtttaattaaga 410  Q
    |||||||||||||| ||||||||||||||| |    |||||||||||| ||  ||| |||||| |||||||    ||||| |||||| ||||| |||||     
T  27570 tatgaaaacaatttgactttattttatcttctgttatagaaataacttatacataagcacttacatgataagagcttatgctataagcgtttatttaagt 27471  T
Q  411 tgtttatccaa 421  Q
    |||||||||||    
T  27470 tgtttatccaa 27460  T

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Target: scaffold0024; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 342
Target Start/End: Original strand, 21357 - 21385
Alignment:
Q  314 gaaaacaatttaactttattttatctttt 342  Q
    |||||||||||||||||||||||||||||    
T  21357 gaaaacaatttaactttattttatctttt 21385  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 302
Target Start/End: Original strand, 25487466 - 25487521
Alignment:
Q  247 actataggcctattttgattaactcatttgagtttatctattgacataaacacttg 302  Q
    ||||||| | |||||||||||||| |||||||||||||||||  ||||| ||||||    
T  25487466 actatagccatattttgattaacttatttgagtttatctattagcataagcacttg 25487521  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 49803203 - 49803158
Alignment:
Q  313 tgaaaacaatttaactttattttatcttttacgctagaaataactt 358  Q
    ||||||||||||||||| |||||||||||| |  ||||||||||||    
T  49803203 tgaaaacaatttaacttcattttatcttttgctatagaaataactt 49803158  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 421
Target Start/End: Original strand, 4684243 - 4684295
Alignment:
Q  369 acttatatgataaacatttatgatataagggtttaattaagatgtttatccaa 421  Q
    |||||||||||||||| |||||||| ||| | ||||||||| | |||||||||    
T  4684243 acttatatgataaacacttatgatagaagtgcttaattaagctatttatccaa 4684295  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 342
Target Start/End: Complemental strand, 25885850 - 25885822
Alignment:
Q  314 gaaaacaatttaactttattttatctttt 342  Q
    |||||||||||||||||||||||||||||    
T  25885850 gaaaacaatttaactttattttatctttt 25885822  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 383
Target Start/End: Complemental strand, 30024694 - 30024622
Alignment:
Q  311 tatgaaaacaatttaactttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaac 383  Q
    |||||||||||||| |||||||||||||||||    |||||||||||| |   |||  |||||||||||||||    
T  30024694 tatgaaaacaattttactttattttatcttttgttatagaaataacttatgcataagtacttatatgataaac 30024622  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 342
Target Start/End: Complemental strand, 43505955 - 43505919
Alignment:
Q  306 tagcttatgaaaacaatttaactttattttatctttt 342  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  43505955 tagcttataaaaacaatttaacgttattttatctttt 43505919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 341
Target Start/End: Original strand, 52294036 - 52294072
Alignment:
Q  305 atagcttatgaaaacaatttaactttattttatcttt 341  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  52294036 atagtttatgaaaacaatttcactttattttatcttt 52294072  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 358
Target Start/End: Complemental strand, 849652 - 849609
Alignment:
Q  315 aaaacaatttaactttattttatcttttacgctagaaataactt 358  Q
    |||||||||||||||||||||||||||| || ||||||| ||||    
T  849652 aaaacaatttaactttattttatcttttccgatagaaatgactt 849609  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 342
Target Start/End: Original strand, 10101552 - 10101583
Alignment:
Q  311 tatgaaaacaatttaactttattttatctttt 342  Q
    ||||||||||||||||||||||||||||||||    
T  10101552 tatgaaaacaatttaactttattttatctttt 10101583  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 342
Target Start/End: Original strand, 10212477 - 10212508
Alignment:
Q  311 tatgaaaacaatttaactttattttatctttt 342  Q
    ||||||||||||||||||||||||||||||||    
T  10212477 tatgaaaacaatttaactttattttatctttt 10212508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 342
Target Start/End: Original strand, 15304423 - 15304454
Alignment:
Q  311 tatgaaaacaatttaactttattttatctttt 342  Q
    ||||||||||||||||||||||||||||||||    
T  15304423 tatgaaaacaatttaactttattttatctttt 15304454  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 417
Target Start/End: Complemental strand, 54775107 - 54775016
Alignment:
Q  326 actttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaacatttatgatataagggtttaattaagatgtttat 417  Q
    |||||||||||||||||    ||||||||||||  | |||| ||||| |||||||| |||||||| |||| | | ||||||||| |||||||    
T  54775107 actttattttatcttttgttatagaaataacttaaacgtaagcacttttatgataatcatttatgctatatgtggttaattaagctgtttat 54775016  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 381
Target Start/End: Original strand, 3182438 - 3182508
Alignment:
Q  311 tatgaaaacaatttaactttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataa 381  Q
    |||||||||||||| ||||||||||||||||| |  ||||| |||||| ||  ||| |||||| |||||||    
T  3182438 tatgaaaacaatttgactttattttatctttttctatagaagtaacttatacataaacacttaaatgataa 3182508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 421
Target Start/End: Original strand, 20874433 - 20874486
Alignment:
Q  368 cacttatatgataaacatttatgatataagggtttaattaagatgtttatccaa 421  Q
    |||||||||||||  |||||||| |||||| | ||||||||| |||||||||||    
T  20874433 cacttatatgatatgcatttatgctataagtgcttaattaagttgtttatccaa 20874486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 396
Target Start/End: Original strand, 16790181 - 16790249
Alignment:
Q  328 tttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaacatttatgatataa 396  Q
    |||||||||||||||    |||||||||||| ||| ||| ||||||||||||||||  ||||| |||||    
T  16790181 tttattttatcttttgttatagaaataacttatatataagcacttatatgataaacgcttatgctataa 16790249  T

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Target: scaffold0590 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 420
Target Start/End: Original strand, 1165 - 1259
Alignment:
Q  326 actttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaacatttatgatataagggtttaattaagatgtttatcca 420  Q
    |||||||||||||||||    |||||||| ||| ||  ||| ||||||||||||| || |||||| ||||||   ||||||||| ||||||||||    
T  1165 actttattttatcttttgttatagaaatagcttatacataagcacttatatgatagacgtttatgctataagtacttaattaagttgtttatcca 1259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 420
Target Start/End: Complemental strand, 2810 - 2716
Alignment:
Q  326 actttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaacatttatgatataagggtttaattaagatgtttatcca 420  Q
    |||||||||||||||||    |||||||| ||| ||  ||| ||||||||||||| || |||||| ||||||   ||||||||| ||||||||||    
T  2810 actttattttatcttttgttatagaaatagcttatacataagcacttatatgatagacgtttatgctataagtacttaattaagttgtttatcca 2716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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