View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3857_high_26 (Length: 378)
Name: NF3857_high_26
Description: NF3857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3857_high_26 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 12 - 348
Target Start/End: Original strand, 18603613 - 18603950
Alignment:
| Q |
12 |
agagaataacatactaaagaagtcgatagcatatcgaccttgccggaacaatgaagaaacattttatcaccaccaataggcgtaaccaccacattgtgaa |
111 |
Q |
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| T |
18603613 |
agagaataacatactaaagaagtcgatagcatatcgaccttgctggaacaatgaagaaacattttatcaccaccaataggcgtaaccaccacattgtgaa |
18603712 |
T |
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| Q |
112 |
a-cccgcatcgacaactctttgttgtacatctaacgaagaataccccgccaccactgtcgctactaattctgcagatgcctgtgtctgatcctcagtgac |
210 |
Q |
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| T |
18603713 |
aacccgcatcgacaactctttgttgtacatctaacgaagaataccccgccaccattgtcgctactaatcctgcagatgcctatgtcagatcctcagtaac |
18603812 |
T |
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| Q |
211 |
tgtttgatacaaaagtttttgatgtcggtccgggagaacagacttagtttgcgctattgcctccttcattgccttcagactttcgacagtttcgctctat |
310 |
Q |
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| T |
18603813 |
tgtttgatacaaaagtttttgatgccggtccgggtgaacagacttagtttgcgccattgcctccttcattgccttcaaactttcgacagtttcgctctat |
18603912 |
T |
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| Q |
311 |
tcttcacgttcaaaatccttacaaaaccgtagacctac |
348 |
Q |
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| T |
18603913 |
tcttcacattcaaaaaccttacaaaaccgtagacctac |
18603950 |
T |
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