View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3857_high_27 (Length: 375)
Name: NF3857_high_27
Description: NF3857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3857_high_27 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 16 - 357
Target Start/End: Original strand, 10057101 - 10057461
Alignment:
| Q |
16 |
gtaacaaatctggaaaattgtcttgttgcaatgaaaa--aattgtggaaaatgacataggtgtgtgagtaactttttgatggtattgttgtcgtgaattg |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10057101 |
gtaacaaatctggaaaattgtcttgttgcaatgaaaaaaaattgtggaaaatgacataggtgtgtgagtaactttttgatggtattgttgtcgtgaattg |
10057200 |
T |
|
| Q |
114 |
ggattgtaatttgaggatgacaggatccaaacaaacagtagggacaaaataccttatcagttaacgtcatcaaaaattcaagtggttcatattaagagat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10057201 |
ggattgtaatttgaggatgacaggatccaaacaaacagtagggacaaaataccttatcagttaacgtcatcaaaaattcaagtggttcatattaagagat |
10057300 |
T |
|
| Q |
214 |
aggaacaacattagatttgggaaaagtgaattgtatccaacctctcacgttatgggttttgattgag--ggtaccctacttaggccatttttaat----- |
306 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
10057301 |
agggacaacattagatttgggaaaagtgaattgtatccaacctctcacgttatgggttttgattgaggaggtaccctacttaggccatttttaatccaat |
10057400 |
T |
|
| Q |
307 |
----------tacataaaaattggtttcttgatactctaatgtaaagatttttaatctctg |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10057401 |
ccaataataatacataaaaattggtttcttgatactctaatgtaaagatttttaatctctg |
10057461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University