View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3857_high_28 (Length: 369)
Name: NF3857_high_28
Description: NF3857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3857_high_28 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 18 - 355
Target Start/End: Complemental strand, 33658462 - 33658130
Alignment:
| Q |
18 |
caaccaattaaaattggtattcaaacaatggatgtgtcgtgtggactgtggaaggtttgcaagaatatatgtcgagattgatttgaatctatcaattgtt |
117 |
Q |
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| T |
33658462 |
caaccaattaaagttgatattcaaacaatggatgtgt-------attgtggaaggtttgcaagaatatatgtcgagattgatttgaatctatcaattatt |
33658370 |
T |
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| Q |
118 |
ggccagttatggattcatgatagatag-ttcatagtcaaatatgaaggtctccatctgttgtgcaagaattatgggag--atatggccatgtgtcctcac |
214 |
Q |
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| T |
33658369 |
ggccagttatggattcatgatagatagtttcatagtcaaatatgaaggtctccatctgttgtgcaagaattatgggagatatatggccatgcgtcctcac |
33658270 |
T |
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| Q |
215 |
atttaagataatgtcgaaattgtgtttgaataaatatgttagttttgtttgtttannnnnnnggttaaatttaatatcaacttnnnnnnnnnnntattga |
314 |
Q |
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| T |
33658269 |
atttaagataatgtcgaaattttgtttgaataaatatgttagttttgtttgtttatttttttggttaaatttaatatctactt-aaaaaacaaatattga |
33658171 |
T |
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| Q |
315 |
aagtttaaagtgaaggaatatctcccaaaatgtgtagtata |
355 |
Q |
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| T |
33658170 |
aagtttaaagcgaaggaatatctcccaaaatgtgtaatata |
33658130 |
T |
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