View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3857_high_38 (Length: 319)

Name: NF3857_high_38
Description: NF3857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3857_high_38
NF3857_high_38
[»] chr2 (20 HSPs)
chr2 (16-116)||(30078366-30078466)
chr2 (214-303)||(30020147-30020236)
chr2 (214-303)||(30078565-30078654)
chr2 (214-303)||(30103407-30103496)
chr2 (214-303)||(30121636-30121725)
chr2 (214-303)||(30136641-30136730)
chr2 (214-303)||(30040459-30040548)
chr2 (214-303)||(30109937-30110026)
chr2 (214-303)||(30234597-30234686)
chr2 (16-90)||(30136896-30136970)
chr2 (16-91)||(30019839-30019914)
chr2 (16-91)||(30040781-30040856)
chr2 (16-91)||(30110259-30110334)
chr2 (16-91)||(30234919-30234994)
chr2 (78-116)||(30020000-30020038)
chr2 (78-116)||(30040657-30040695)
chr2 (78-116)||(30110135-30110173)
chr2 (78-116)||(30121833-30121871)
chr2 (78-116)||(30234795-30234833)
chr2 (78-114)||(30136832-30136868)


Alignment Details
Target: chr2 (Bit Score: 101; Significance: 5e-50; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 16 - 116
Target Start/End: Original strand, 30078366 - 30078466
Alignment:
Q  16 ttttcatttcagtgatataaaacactcattagcaaatttgacctaattgtattcattgttttaaatcaactaacagctaacaaataagagatggcaatag 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30078366 ttttcatttcagtgatataaaacactcattagcaaatttgacctaattgtattcattgttttaaatcaactaacagctaacaaataagagatggcaatag 30078465  T
Q  116 a 116  Q
    |    
T  30078466 a 30078466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 214 - 303
Target Start/End: Original strand, 30020147 - 30020236
Alignment:
Q  214 ctaaattgaacacagacacacttttatgccacacgatggtgtttctcttccctttttcttcttccaccaatcatttaatattgtcttcat 303  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30020147 ctaaattgaacacagacacatttttatgccacacgatggtgtttctcttctctttttcttcttccaccaatcatttaatattgtcttcat 30020236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 214 - 303
Target Start/End: Original strand, 30078565 - 30078654
Alignment:
Q  214 ctaaattgaacacagacacacttttatgccacacgatggtgtttctcttccctttttcttcttccaccaatcatttaatattgtcttcat 303  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30078565 ctaaattgaacacagacacatttttatgccacacgatggtgtttctcttctctttttcttcttccaccaatcatttaatattgtcttcat 30078654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 214 - 303
Target Start/End: Complemental strand, 30103496 - 30103407
Alignment:
Q  214 ctaaattgaacacagacacacttttatgccacacgatggtgtttctcttccctttttcttcttccaccaatcatttaatattgtcttcat 303  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30103496 ctaaattgaacacagacacatttttatgccacacgatggtgtttctcttctctttttcttcttccaccaatcatttaatattgtcttcat 30103407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 214 - 303
Target Start/End: Complemental strand, 30121725 - 30121636
Alignment:
Q  214 ctaaattgaacacagacacacttttatgccacacgatggtgtttctcttccctttttcttcttccaccaatcatttaatattgtcttcat 303  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30121725 ctaaattgaacacagacacatttttatgccacacgatggtgtttctcttctctttttcttcttccaccaatcatttaatattgtcttcat 30121636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 214 - 303
Target Start/End: Complemental strand, 30136730 - 30136641
Alignment:
Q  214 ctaaattgaacacagacacacttttatgccacacgatggtgtttctcttccctttttcttcttccaccaatcatttaatattgtcttcat 303  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30136730 ctaaattgaacacagacacatttttatgccacacgatggtgtttctcttctctttttcttcttccaccaatcatttaatattgtcttcat 30136641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 214 - 303
Target Start/End: Complemental strand, 30040548 - 30040459
Alignment:
Q  214 ctaaattgaacacagacacacttttatgccacacgatggtgtttctcttccctttttcttcttccaccaatcatttaatattgtcttcat 303  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  30040548 ctaaattgaacacagacacatttttatgccacacgatggtgtttctcttctctttttcttcttccaccaatcatttactattgtcttcat 30040459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 214 - 303
Target Start/End: Complemental strand, 30110026 - 30109937
Alignment:
Q  214 ctaaattgaacacagacacacttttatgccacacgatggtgtttctcttccctttttcttcttccaccaatcatttaatattgtcttcat 303  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  30110026 ctaaattgaacacagacacatttttatgccacacgatggtgtttctcttctctttttcttcttccaccaatcatttactattgtcttcat 30109937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 214 - 303
Target Start/End: Complemental strand, 30234686 - 30234597
Alignment:
Q  214 ctaaattgaacacagacacacttttatgccacacgatggtgtttctcttccctttttcttcttccaccaatcatttaatattgtcttcat 303  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  30234686 ctaaattgaacacagacacatttttatgccacacgatggtgtttctcttctctttttcttcttccaccaatcatttactattgtcttcat 30234597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 16 - 90
Target Start/End: Complemental strand, 30136970 - 30136896
Alignment:
Q  16 ttttcatttcagtgatataaaacactcattagcaaatttgacctaattgtattcattgttttaaatcaactaaca 90  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30136970 ttttcatttcagtgatataaaacactcattagcaaatttgacctaattgtattcattgttttaaatcaactaaca 30136896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 30019839 - 30019914
Alignment:
Q  16 ttttcatttcagtgatataaaacactcattagcaaatttgacctaattgtattcattgttttaaatcaactaacag 91  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30019839 ttttcattttagtgatataaaacactcattagcaaatttgacctaattgtattcattgttttaaatcaactaacag 30019914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 30040856 - 30040781
Alignment:
Q  16 ttttcatttcagtgatataaaacactcattagcaaatttgacctaattgtattcattgttttaaatcaactaacag 91  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30040856 ttttcattttagtgatataaaacactcattagcaaatttgacctaattgtattcattgttttaaatcaactaacag 30040781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 30110334 - 30110259
Alignment:
Q  16 ttttcatttcagtgatataaaacactcattagcaaatttgacctaattgtattcattgttttaaatcaactaacag 91  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30110334 ttttcattttagtgatataaaacactcattagcaaatttgacctaattgtattcattgttttaaatcaactaacag 30110259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 30234994 - 30234919
Alignment:
Q  16 ttttcatttcagtgatataaaacactcattagcaaatttgacctaattgtattcattgttttaaatcaactaacag 91  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30234994 ttttcattttagtgatataaaacactcattagcaaatttgacctaattgtattcattgttttaaatcaactaacag 30234919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 78 - 116
Target Start/End: Original strand, 30020000 - 30020038
Alignment:
Q  78 aaatcaactaacagctaacaaataagagatggcaataga 116  Q
    |||||||||||||||||||||||||||||||||||||||    
T  30020000 aaatcaactaacagctaacaaataagagatggcaataga 30020038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 78 - 116
Target Start/End: Complemental strand, 30040695 - 30040657
Alignment:
Q  78 aaatcaactaacagctaacaaataagagatggcaataga 116  Q
    |||||||||||||||||||||||||||||||||||||||    
T  30040695 aaatcaactaacagctaacaaataagagatggcaataga 30040657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 78 - 116
Target Start/End: Complemental strand, 30110173 - 30110135
Alignment:
Q  78 aaatcaactaacagctaacaaataagagatggcaataga 116  Q
    |||||||||||||||||||||||||||||||||||||||    
T  30110173 aaatcaactaacagctaacaaataagagatggcaataga 30110135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 78 - 116
Target Start/End: Complemental strand, 30121871 - 30121833
Alignment:
Q  78 aaatcaactaacagctaacaaataagagatggcaataga 116  Q
    |||||||||||||||||||||||||||||||||||||||    
T  30121871 aaatcaactaacagctaacaaataagagatggcaataga 30121833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 78 - 116
Target Start/End: Complemental strand, 30234833 - 30234795
Alignment:
Q  78 aaatcaactaacagctaacaaataagagatggcaataga 116  Q
    |||||||||||||||||||||||||||||||||||||||    
T  30234833 aaatcaactaacagctaacaaataagagatggcaataga 30234795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 78 - 114
Target Start/End: Complemental strand, 30136868 - 30136832
Alignment:
Q  78 aaatcaactaacagctaacaaataagagatggcaata 114  Q
    |||||||||||||||||||||||||||||||||||||    
T  30136868 aaatcaactaacagctaacaaataagagatggcaata 30136832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University