View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3857_high_39 (Length: 315)

Name: NF3857_high_39
Description: NF3857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3857_high_39
NF3857_high_39
[»] chr2 (9 HSPs)
chr2 (18-304)||(30019559-30019845)
chr2 (18-304)||(30040850-30041136)
chr2 (18-304)||(30078086-30078372)
chr2 (18-304)||(30110328-30110614)
chr2 (18-304)||(30234988-30235274)
chr2 (147-304)||(30136964-30137121)
chr2 (147-283)||(30045941-30046077)
chr2 (150-196)||(39324796-39324842)
chr2 (151-196)||(42352251-42352296)
[»] chr8 (1 HSPs)
chr8 (150-210)||(3771638-3771698)
[»] chr5 (7 HSPs)
chr5 (140-225)||(41982520-41982605)
chr5 (150-196)||(4650341-4650387)
chr5 (150-191)||(38734692-38734733)
chr5 (150-196)||(2858210-2858256)
chr5 (150-191)||(2846389-2846430)
chr5 (177-222)||(29302550-29302595)
chr5 (162-222)||(3082689-3082748)
[»] chr6 (3 HSPs)
chr6 (140-190)||(33940956-33941006)
chr6 (156-233)||(2308372-2308448)
chr6 (150-196)||(27991927-27991973)
[»] chr1 (4 HSPs)
chr1 (139-225)||(8245431-8245517)
chr1 (18-62)||(17439330-17439374)
chr1 (150-225)||(42106999-42107074)
chr1 (150-212)||(1035397-1035458)
[»] chr7 (2 HSPs)
chr7 (144-210)||(38735907-38735973)
chr7 (139-192)||(31446665-31446718)
[»] chr4 (2 HSPs)
chr4 (150-196)||(34121090-34121136)
chr4 (139-196)||(38516122-38516179)
[»] chr3 (2 HSPs)
chr3 (149-225)||(25750837-25750914)
chr3 (160-253)||(49222430-49222523)


Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 304
Target Start/End: Original strand, 30019559 - 30019845
Alignment:
Q  18 gttggaggagattaaccaattaaggcaccatcttagagaaagagtggttgctctttttatacgagaagaatcccaactacagacttagaacaagaaccta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30019559 gttggaggagattaaccaattaaggcaccatcttagagaaagagtggttgctctttttatacgagaagaatcccaactacagacttagaacaagaaccta 30019658  T
Q  118 aattctttctcttgcaatattgagaaaaaacttaaatgatgttgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtgagtatgtc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30019659 aattctttctcttgcaatattgagaaaaaacttaaatgatgttgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtgagtatgtc 30019758  T
Q  218 taaatattgtttattttatgttgtgattatagaagacttacacttaataaactaatccataaatatgaatattattttagttttcat 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30019759 taaatattgtttattttatgttgtgattatagaagacttacacttaataaactaatccataaatatcaatattattttagttttcat 30019845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 304
Target Start/End: Complemental strand, 30041136 - 30040850
Alignment:
Q  18 gttggaggagattaaccaattaaggcaccatcttagagaaagagtggttgctctttttatacgagaagaatcccaactacagacttagaacaagaaccta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30041136 gttggaggagattaaccaattaaggcaccatcttagagaaagagtggttgctctttttatacgagaagaatcccaactacagacttagaacaagaaccta 30041037  T
Q  118 aattctttctcttgcaatattgagaaaaaacttaaatgatgttgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtgagtatgtc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  30041036 aattctttctcttgcaatattgagaaaaaacttaaatgatgttgattgatgtgatcaaattatttttgttttaatttttctaatttaatgtgagtatgtc 30040937  T
Q  218 taaatattgtttattttatgttgtgattatagaagacttacacttaataaactaatccataaatatgaatattattttagttttcat 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30040936 taaatattgtttattttatgttgtgattatagaagacttacacttaataaactaatccataaatatcaatattattttagttttcat 30040850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 304
Target Start/End: Original strand, 30078086 - 30078372
Alignment:
Q  18 gttggaggagattaaccaattaaggcaccatcttagagaaagagtggttgctctttttatacgagaagaatcccaactacagacttagaacaagaaccta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30078086 gttggaggagattaaccaattaaggcaccatcttagagaaagagtggttgctctttttatacgagaagaatcccaactacagacttagaacaagaaccta 30078185  T
Q  118 aattctttctcttgcaatattgagaaaaaacttaaatgatgttgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtgagtatgtc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30078186 aattctttctcttgcaatattgagaaaaaacttaaatgatgttgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtgagtatgtc 30078285  T
Q  218 taaatattgtttattttatgttgtgattatagaagacttacacttaataaactaatccataaatatgaatattattttagttttcat 304  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30078286 taaaaattgtttaatttatgttgtgattatagaagacttacacttaataaactaatccataaatatgaatattattttagttttcat 30078372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 304
Target Start/End: Complemental strand, 30110614 - 30110328
Alignment:
Q  18 gttggaggagattaaccaattaaggcaccatcttagagaaagagtggttgctctttttatacgagaagaatcccaactacagacttagaacaagaaccta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30110614 gttggaggagattaaccaattaaggcaccatcttagagaaagagtggttgctctttttatacgagaagaatcccaactacagacttagaacaagaaccta 30110515  T
Q  118 aattctttctcttgcaatattgagaaaaaacttaaatgatgttgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtgagtatgtc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  30110514 aattctttctcttgcaatattgagaaaaaacttaaatgatgttgattgatgtgatcaaattatttttgttttaatttttctaatttaatgtgagtatgtc 30110415  T
Q  218 taaatattgtttattttatgttgtgattatagaagacttacacttaataaactaatccataaatatgaatattattttagttttcat 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30110414 taaatattgtttattttatgttgtgattatagaagacttacacttaataaactaatccataaatatcaatattattttagttttcat 30110328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 304
Target Start/End: Complemental strand, 30235274 - 30234988
Alignment:
Q  18 gttggaggagattaaccaattaaggcaccatcttagagaaagagtggttgctctttttatacgagaagaatcccaactacagacttagaacaagaaccta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30235274 gttggaggagattaaccaattaaggcaccatcttagagaaagagtggttgctctttttatacgagaagaatcccaactacagacttagaacaagaaccta 30235175  T
Q  118 aattctttctcttgcaatattgagaaaaaacttaaatgatgttgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtgagtatgtc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  30235174 aattctttctcttgcaatattgagaaaaaacttaaatgatgttgattgatgtgatcaaattatttttgttttaatttttctaatttaatgtgagtatgtc 30235075  T
Q  218 taaatattgtttattttatgttgtgattatagaagacttacacttaataaactaatccataaatatgaatattattttagttttcat 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30235074 taaatattgtttattttatgttgtgattatagaagacttacacttaataaactaatccataaatatcaatattattttagttttcat 30234988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 147 - 304
Target Start/End: Complemental strand, 30137121 - 30136964
Alignment:
Q  147 acttaaatgatgttgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtgagtatgtctaaatattgtttattttatgttgtgatta 246  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30137121 acttaaatgatgttgattgatgtgatcaaattatttttgttttaatttttctaatttaatgtgagtatgtctaaatattgtttattttatgttgtgatta 30137022  T
Q  247 tagaagacttacacttaataaactaatccataaatatgaatattattttagttttcat 304  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30137021 tagaagacttacacttaataaactaatccataaatatcaatattattttagttttcat 30136964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 147 - 283
Target Start/End: Complemental strand, 30046077 - 30045941
Alignment:
Q  147 acttaaatgatgttgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtgagtatgtctaaatattgtttattttatgttgtgatta 246  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30046077 acttaaatgatgttgattgatgtgatcaaattatttttgttttaatttttctaatttaatgtgagtatgtctaaatattgtttattttatgttgtgatta 30045978  T
Q  247 tagaagacttacacttaataaactaatccataaatat 283  Q
    |||||||||||||||||||||||||||||||||||||    
T  30045977 tagaagacttacacttaataaactaatccataaatat 30045941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 196
Target Start/End: Complemental strand, 39324842 - 39324796
Alignment:
Q  150 taaatgatgttgattgatgtgatcaaattatctttgttttaattttt 196  Q
    |||||||| ||||||||||||||| |||||| |||||||||| ||||    
T  39324842 taaatgatattgattgatgtgatctaattatttttgttttaaatttt 39324796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 42352251 - 42352296
Alignment:
Q  151 aaatgatgttgattgatgtgatcaaattatctttgttttaattttt 196  Q
    ||||| |||||||||||||||| | ||||| |||||||||||||||    
T  42352251 aaatgttgttgattgatgtgattacattatttttgttttaattttt 42352296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 3771638 - 3771698
Alignment:
Q  150 taaatgatgttgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtga 210  Q
    ||||||||||||||||||||||| | ||||| ||||||||||||||| | |||||||||||    
T  3771638 taaatgatgttgattgatgtgattatattatttttgttttaatttttttcatttaatgtga 3771698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 140 - 225
Target Start/End: Original strand, 41982520 - 41982605
Alignment:
Q  140 agaaaaaacttaaatgatgttgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtgagtatgtctaaatatt 225  Q
    ||||||||  ||||||||||||||||||| |||| |||||| |||||||||| |||| | |||| |||||||| || | |||||||    
T  41982520 agaaaaaaactaaatgatgttgattgatgggatctaattatttttgttttaaattttttcatttgatgtgagtgtgcccaaatatt 41982605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 196
Target Start/End: Original strand, 4650341 - 4650387
Alignment:
Q  150 taaatgatgttgattgatgtgatcaaattatctttgttttaattttt 196  Q
    |||||||||||||||||||||||| |||||| |||||||||| ||||    
T  4650341 taaatgatgttgattgatgtgatctaattatttttgttttaaatttt 4650387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 191
Target Start/End: Original strand, 38734692 - 38734733
Alignment:
Q  150 taaatgatgttgattgatgtgatcaaattatctttgttttaa 191  Q
    |||||||||||||||||||||||| |||||| ||||||||||    
T  38734692 taaatgatgttgattgatgtgatctaattatttttgttttaa 38734733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 196
Target Start/End: Original strand, 2858210 - 2858256
Alignment:
Q  150 taaatgatgttgattgatgtgatcaaattatctttgttttaattttt 196  Q
    |||||||||||||||||||||||| | |||| |||||||||| ||||    
T  2858210 taaatgatgttgattgatgtgatctatttatttttgttttaaatttt 2858256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 191
Target Start/End: Original strand, 2846389 - 2846430
Alignment:
Q  150 taaatgatgttgattgatgtgatcaaattatctttgttttaa 191  Q
    ||||||||||||||||| |||||| |||||| ||||||||||    
T  2846389 taaatgatgttgattgaggtgatctaattatttttgttttaa 2846430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 29302550 - 29302595
Alignment:
Q  177 ttatctttgttttaatttttctaatttaatgtgagtatgtctaaat 222  Q
    |||| ||||||||||||||| |||||| ||||||||||| ||||||    
T  29302550 ttatttttgttttaatttttttaattttatgtgagtatgcctaaat 29302595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 222
Target Start/End: Complemental strand, 3082748 - 3082689
Alignment:
Q  162 attgatgtgatcaaattatctttgttttaatttttctaatttaatgtgagtatgtctaaat 222  Q
    |||||| |||| ||||||| ||||||||||||||| | |||| |||||||| |||||||||    
T  3082748 attgatatgattaaattatttttgttttaattttt-tcattttatgtgagtgtgtctaaat 3082689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 190
Target Start/End: Original strand, 33940956 - 33941006
Alignment:
Q  140 agaaaaaacttaaatgatgttgattgatgtgatcaaattatctttgtttta 190  Q
    |||| ||| |||||||||||||||||||||||| ||||||| |||||||||    
T  33940956 agaataaaattaaatgatgttgattgatgtgattaaattatttttgtttta 33941006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 233
Target Start/End: Original strand, 2308372 - 2308448
Alignment:
Q  156 atgttgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtgagtatgtctaaatattgtttattt 233  Q
    ||||||||||||||||| | ||||| ||||||||||||||| | |||| |||||||| || | ||||||| |||||||    
T  2308372 atgttgattgatgtgattatattatttttgttttaattttt-tgatttgatgtgagtgtgcccaaatattttttattt 2308448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 196
Target Start/End: Original strand, 27991927 - 27991973
Alignment:
Q  150 taaatgatgttgattgatgtgatcaaattatctttgttttaattttt 196  Q
    |||| |||||||||||||||||| | ||||| |||||||||||||||    
T  27991927 taaaagatgttgattgatgtgattatattatttttgttttaattttt 27991973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 225
Target Start/End: Original strand, 8245431 - 8245517
Alignment:
Q  139 gagaaaaaacttaaatgatgttgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtgagtatgtctaaatatt 225  Q
    ||||| ||| ||||||||||||||||||||||||  |||||| ||||||| || ||||   |||| |||||||| | ||||||||||    
T  8245431 gagaataaaattaaatgatgttgattgatgtgatttaattatttttgtttaaaatttttccatttgatgtgagtgtttctaaatatt 8245517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 17439374 - 17439330
Alignment:
Q  18 gttggaggagattaaccaattaaggcaccatcttagagaaagagt 62  Q
    |||||||||||||| |||||||||||||||||||| || ||||||    
T  17439374 gttggaggagattagccaattaaggcaccatcttaaagcaagagt 17439330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 150 - 225
Target Start/End: Complemental strand, 42107074 - 42106999
Alignment:
Q  150 taaatgatgttgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtgagtatgtctaaatatt 225  Q
    ||||||||||| |||||||||||  |||||| |||||||||| ||||   |||| |||||||| |||| |||||||    
T  42107074 taaatgatgttaattgatgtgatttaattatttttgttttaaatttttccatttgatgtgagtgtgtccaaatatt 42106999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 1035458 - 1035397
Alignment:
Q  150 taaatgatgttgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtgagt 212  Q
    |||||||| | |||| |||||||| |||||| ||||||||||||||| | |||||||||||||    
T  1035458 taaatgatatagattaatgtgatctaattatttttgttttaattttt-ttatttaatgtgagt 1035397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 210
Target Start/End: Original strand, 38735907 - 38735973
Alignment:
Q  144 aaaacttaaatgatgttgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtga 210  Q
    |||| ||||||||||||||||||||||||  |||||| |||| ||||| |||| | |||| ||||||    
T  38735907 aaaaattaaatgatgttgattgatgtgatttaattatttttgctttaaattttttcatttgatgtga 38735973  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 192
Target Start/End: Original strand, 31446665 - 31446718
Alignment:
Q  139 gagaaaaaacttaaatgatgttgattgatgtgatcaaattatctttgttttaat 192  Q
    ||||| ||| ||||||||||||||||||| |||  ||||||| |||||||||||    
T  31446665 gagaataaaattaaatgatgttgattgatatgaataaattatttttgttttaat 31446718  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 196
Target Start/End: Complemental strand, 34121136 - 34121090
Alignment:
Q  150 taaatgatgttgattgatgtgatcaaattatctttgttttaattttt 196  Q
    ||||||||||||||||||||||| | ||||| |||||||||| ||||    
T  34121136 taaatgatgttgattgatgtgattatattatttttgttttaactttt 34121090  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 196
Target Start/End: Original strand, 38516122 - 38516179
Alignment:
Q  139 gagaaaaaacttaaatgatgttgattgatgtgatcaaattatctttgttttaattttt 196  Q
    ||||| ||| ||||||||||||||||||||||||  |||||  |||||||| ||||||    
T  38516122 gagaataaaattaaatgatgttgattgatgtgatttaattaattttgtttttattttt 38516179  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 225
Target Start/End: Complemental strand, 25750914 - 25750837
Alignment:
Q  149 ttaaatgatgttgattgatgtgatcaaatta-tctttgtttt-aatttttctaatttaatgtgagtatgtctaaatatt 225  Q
    ||||||||||||||||||||| ||  ||||| | |||||||| ||||||||| |||| |||||||| ||||||||||||    
T  25750914 ttaaatgatgttgattgatgtaatttaattattttttgttttaaatttttct-atttgatgtgagtgtgtctaaatatt 25750837  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 253
Target Start/End: Original strand, 49222430 - 49222523
Alignment:
Q  160 tgattgatgtgatcaaattatctttgttttaatttttctaatttaatgtgagtatgtctaaatattgtttattttatgttgtgattatagaaga 253  Q
    ||||||||||||| ||| ||| ||| ||||||| ||| | |||| |||||||| | | |||| ||| ||||||| | |||||||||||| ||||    
T  49222430 tgattgatgtgattaaactatttttattttaatatttttcatttgatgtgagtgtatttaaacattttttatttaaagttgtgattataaaaga 49222523  T

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