View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3857_high_41 (Length: 311)

Name: NF3857_high_41
Description: NF3857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3857_high_41
NF3857_high_41
[»] chr4 (3 HSPs)
chr4 (41-301)||(55871192-55871452)
chr4 (1-39)||(20281227-20281265)
chr4 (5-41)||(24827826-24827862)
[»] chr7 (2 HSPs)
chr7 (5-41)||(22760864-22760900)
chr7 (2-41)||(23301638-23301677)
[»] chr6 (2 HSPs)
chr6 (5-41)||(31623030-31623066)
chr6 (5-41)||(33549105-33549141)
[»] chr3 (3 HSPs)
chr3 (1-41)||(39976466-39976506)
chr3 (2-41)||(31510754-31510793)
chr3 (5-41)||(9832498-9832534)
[»] scaffold0258 (1 HSPs)
scaffold0258 (5-41)||(15362-15398)
[»] chr5 (1 HSPs)
chr5 (5-41)||(16773808-16773844)
[»] chr2 (1 HSPs)
chr2 (9-41)||(35916087-35916119)


Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 41 - 301
Target Start/End: Original strand, 55871192 - 55871452
Alignment:
Q  41 tgaaaactttttgtctttggattatatttatcttctaatttcctctaattcaaaataccacgtggatccaaggatgtattaatttagttataagagttca 140  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  55871192 tgaaaactttttgtctttgcattatatttatcttctaatttcctctaattcaaaataccacgtggattcaaggatgtattaatttagttataagagttca 55871291  T
Q  141 ggagattacaggtgattccagattacttcccaaaatctctggccccatttttcttcctgcaaatattattttcagttaatacacatacatacatgctttg 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  55871292 ggagattacaggtgattccagattacttcccaaaatctctggcccaatttttcttcctgcaaatgttattttcagttaatacacatacatacatgctttg 55871391  T
Q  241 atatattatatgttaatgcatgtgtgtataatagagagtgagaagagaaaatgtacctatg 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55871392 atatattatatgttaatgcatgtgtgtataatagagagtgagaagagaaaatgtacctatg 55871452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 20281227 - 20281265
Alignment:
Q  1 tcaagtcccaagtcaataccaccggaccaacccaagtgg 39  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  20281227 tcaattcccaagtcaataccaccggaccaacccaagtgg 20281265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 24827862 - 24827826
Alignment:
Q  5 gtcccaagtcaataccaccggaccaacccaagtgggt 41  Q
    |||||||||||||||||||||||||||| ||||||||    
T  24827862 gtcccaagtcaataccaccggaccaaccaaagtgggt 24827826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 22760900 - 22760864
Alignment:
Q  5 gtcccaagtcaataccaccggaccaacccaagtgggt 41  Q
    ||||||||||||||||||| |||||||||||||||||    
T  22760900 gtcccaagtcaataccaccagaccaacccaagtgggt 22760864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 23301638 - 23301677
Alignment:
Q  2 caagtcccaagtcaataccaccggaccaacccaagtgggt 41  Q
    |||||||||||||||||||||| | |||||||||||||||    
T  23301638 caagtcccaagtcaataccaccaggccaacccaagtgggt 23301677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 31623030 - 31623066
Alignment:
Q  5 gtcccaagtcaataccaccggaccaacccaagtgggt 41  Q
    |||||||| ||||||||||||||||||||||||||||    
T  31623030 gtcccaagccaataccaccggaccaacccaagtgggt 31623066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 33549141 - 33549105
Alignment:
Q  5 gtcccaagtcaataccaccggaccaacccaagtgggt 41  Q
    |||||||| |||||||||| |||||||||||||||||    
T  33549141 gtcccaagccaataccaccagaccaacccaagtgggt 33549105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 39976466 - 39976506
Alignment:
Q  1 tcaagtcccaagtcaataccaccggaccaacccaagtgggt 41  Q
    |||||||||||||||||||||||| ||||||| ||||||||    
T  39976466 tcaagtcccaagtcaataccaccgaaccaacctaagtgggt 39976506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 31510754 - 31510793
Alignment:
Q  2 caagtcccaagtcaataccaccggaccaacccaagtgggt 41  Q
    |||||||||||||||||||||| |||||||| ||||||||    
T  31510754 caagtcccaagtcaataccaccagaccaacctaagtgggt 31510793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 9832534 - 9832498
Alignment:
Q  5 gtcccaagtcaataccaccggaccaacccaagtgggt 41  Q
    |||||||| |||||||||||| |||||||||||||||    
T  9832534 gtcccaagccaataccaccgggccaacccaagtgggt 9832498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 15362 - 15398
Alignment:
Q  5 gtcccaagtcaataccaccggaccaacccaagtgggt 41  Q
    |||||||| |||||||||| |||||||||||||||||    
T  15362 gtcccaagccaataccaccagaccaacccaagtgggt 15398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 16773844 - 16773808
Alignment:
Q  5 gtcccaagtcaataccaccggaccaacccaagtgggt 41  Q
    ||||||||||||||||||| ||||||| |||||||||    
T  16773844 gtcccaagtcaataccaccagaccaactcaagtgggt 16773808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 35916119 - 35916087
Alignment:
Q  9 caagtcaataccaccggaccaacccaagtgggt 41  Q
    ||||||||||||||| |||||||||||||||||    
T  35916119 caagtcaataccaccagaccaacccaagtgggt 35916087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University