View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3857_high_44 (Length: 287)

Name: NF3857_high_44
Description: NF3857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3857_high_44
NF3857_high_44
[»] chr5 (2 HSPs)
chr5 (37-209)||(16053597-16053769)
chr5 (235-276)||(16053794-16053835)
[»] chr3 (13 HSPs)
chr3 (22-199)||(36309760-36309936)
chr3 (28-189)||(36321276-36321437)
chr3 (10-193)||(36333929-36334112)
chr3 (26-159)||(36328106-36328239)
chr3 (10-161)||(36313852-36314000)
chr3 (25-159)||(30227292-30227426)
chr3 (27-159)||(30201117-30201249)
chr3 (25-159)||(30223041-30223175)
chr3 (25-159)||(30230282-30230416)
chr3 (28-98)||(29751856-29751926)
chr3 (26-159)||(29856790-29856923)
chr3 (25-84)||(30239053-30239112)
chr3 (26-98)||(29649039-29649111)
[»] chr7 (2 HSPs)
chr7 (25-159)||(16644743-16644877)
chr7 (25-159)||(17619104-17619238)
[»] chr8 (1 HSPs)
chr8 (27-159)||(14934506-14934638)
[»] chr1 (1 HSPs)
chr1 (20-159)||(16955662-16955801)


Alignment Details
Target: chr5 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 37 - 209
Target Start/End: Original strand, 16053597 - 16053769
Alignment:
Q  37 aggatcattgcaaatgttccaccaaagagggcaaactccgcatgcacttgtcaaaatttcaaatgcaccaagcctctgaaggatatttgatgtcaaatct 136  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  16053597 aggatccttgcaaatgttccaccaaagagggcacactccgcatgcacttgttaaaatttcaaatgcaccaagcctctgaaggatatttgatgtcaaatct 16053696  T
Q  137 ctaggaagatcaagccaatttggtcctgctgggctctcactttcaacttccattgttaaaatataagacgatg 209  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  16053697 ctaggaagatcaagccaatttggtcctgctgtgctctcactttcaacttccattgttaaaatataagatgatg 16053769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 235 - 276
Target Start/End: Original strand, 16053794 - 16053835
Alignment:
Q  235 acgtttgataactgtacactgaccttttatttatagacctat 276  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  16053794 acgtttgataactgtacactgaccttttatttatagacctat 16053835  T

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Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 22 - 199
Target Start/End: Original strand, 36309760 - 36309936
Alignment:
Q  22 agagcgccacatgagaggatcattgcaaatgttccaccaaagagggcaaactccgcatgcacttgtcaaaatttcaaatgcaccaagcctctgaaggata 121  Q
    |||||||||||| |||||||| |||||||||||||||||  | || || |||| ||||||||| |||| ||||||||| ||||||||||| ||||||||     
T  36309760 agagcgccacattagaggatccttgcaaatgttccaccattgcggacacactc-gcatgcactcgtcacaatttcaaacgcaccaagcctatgaaggatg 36309858  T
Q  122 tttgatgtcaaatctctaggaagatcaagccaatttggtcctgctgggctctcactttcaacttccattgttaaaata 199  Q
    |||| |||||||||| ||||||||||||||||||| || |||  || ||| || ||||| ||||||||||||| ||||    
T  36309859 tttgctgtcaaatctataggaagatcaagccaattcggccctcttgtgctttccctttccacttccattgttagaata 36309936  T

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Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 28 - 189
Target Start/End: Original strand, 36321276 - 36321437
Alignment:
Q  28 ccacatgagaggatcattgcaaatgttccaccaaagagggcaaactccgcatgcacttgtcaaaatttcaaatgcaccaagcctctgaaggatatttgat 127  Q
    ||||||||| ||||| |||||||||||| ||||  | ||||| |||| ||| ||||| |||| ||||||||| | |||||||||||||||||| |||  |    
T  36321276 ccacatgagtggatccttgcaaatgttcaaccattgtgggcatactcggcaagcactcgtcacaatttcaaacgtaccaagcctctgaaggatgttttct 36321375  T
Q  128 gtcaaatctctaggaagatcaagccaatttggtcctgctgggctctcactttcaacttccat 189  Q
    |||||||| || ||||||||||||||||||||||||| || ||||||||||||  |||||||    
T  36321376 gtcaaatcacttggaagatcaagccaatttggtcctgttgtgctctcactttcctcttccat 36321437  T

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Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 10 - 193
Target Start/End: Original strand, 36333929 - 36334112
Alignment:
Q  10 gcacatgcagatagagcgccacatgagaggatcattgcaaatgttccaccaaagagggcaaactccgcatgcacttgtcaaaatttcaaatgcaccaagc 109  Q
    ||||||||  |||| |||||||||||||||||| |||||||||||||||||  | || || |||| ||| ||||| |||| |||||| || | |||||||    
T  36333929 gcacatgcgaatagtgcgccacatgagaggatccttgcaaatgttccaccattgtggacacactcggcaagcactcgtcacaatttccaacgtaccaagc 36334028  T
Q  110 ctctgaaggatatttgatgtcaaatctctaggaagatcaagccaatttggtcctgctgggctctcactttcaacttccattgtt 193  Q
    ||||||||||| |||| ||||||||| || | ||| ||| ||||||  || |||| || ||||| ||||||  ||| |||||||    
T  36334029 ctctgaaggatgtttgctgtcaaatcactcgtaaggtcaggccaatacggacctgttgtgctctaactttcctctttcattgtt 36334112  T

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Target: chr3; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 26 - 159
Target Start/End: Original strand, 36328106 - 36328239
Alignment:
Q  26 cgccacatgagaggatcattgcaaatgttccaccaaagagggcaaactccgcatgcacttgtcaaaatttcaaatgcaccaagcctctgaaggatatttg 125  Q
    |||||||||| |||||| ||||||| |||||||||  | ||| | |||| |||||||||  ||| ||||||||| | |||||||||||||||||| ||||    
T  36328106 cgccacatgacaggatccttgcaaacgttccaccattgcggggacactcggcatgcactcctcagaatttcaaacgtaccaagcctctgaaggatgtttg 36328205  T
Q  126 atgtcaaatctctaggaagatcaagccaatttgg 159  Q
     |||||||||  | |||||||||| |||||||||    
T  36328206 ctgtcaaatcaatcggaagatcaaaccaatttgg 36328239  T

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Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 161
Target Start/End: Original strand, 36313852 - 36314000
Alignment:
Q  10 gcacatgcagatagagcgccacatgagaggatcattgcaaatgttccaccaaagagggcaaactccgcatgcacttgtcaaaatttcaaatgcaccaagc 109  Q
    ||||||||  |||| |||||||||||||||||| |||||||| ||| ||||  ||| ||| || |  |||||||| |||| ||||||||    |||||||    
T  36313852 gcacatgcgaatagtgcgccacatgagaggatccttgcaaatcttcaaccattgagtgcatacacaacatgcactcgtcacaatttcaat---accaagc 36313948  T
Q  110 ctctgaaggatatttgatgtcaaatctctaggaagatcaagccaatttggtc 161  Q
    |||||||| || |||  ||||||||| || ||||||||||||||||||||||    
T  36313949 ctctgaagaatgttttctgtcaaatcacttggaagatcaagccaatttggtc 36314000  T

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Target: chr3; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 25 - 159
Target Start/End: Complemental strand, 30227426 - 30227292
Alignment:
Q  25 gcgccacatgagaggatcattgcaaatgttccaccaaagagggcaaactccgcatgcacttgtcaaaatttcaaatgcaccaagcctctgaaggatattt 124  Q
    |||||||||||||||||| ||||||||||||||| | ||||| || |||   ||||||||||||| ||| || |  | ||||||||| ||||| || |||    
T  30227426 gcgccacatgagaggatccttgcaaatgttccactatagaggacacacttgacatgcacttgtcacaatctcgatggtaccaagcctttgaagaatgttt 30227327  T
Q  125 gatgtcaaatctctaggaagatcaagccaatttgg 159  Q
    | ||| |  ||||||||||| ||||||||||||||    
T  30227326 gttgtgatgtctctaggaagttcaagccaatttgg 30227292  T

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Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 159
Target Start/End: Complemental strand, 30201249 - 30201117
Alignment:
Q  27 gccacatgagaggatcattgcaaatgttccaccaaagagggcaaactccgcatgcacttgtcaaaatttcaaatgcaccaagcctctgaaggatatttga 126  Q
    |||||||||||||||| ||||||||||||||||| ||||| || |||   ||||||||||||| ||||||||  | || |||||| ||||| || |||      
T  30201249 gccacatgagaggatccttgcaaatgttccaccatagaggacacacttgacatgcacttgtcacaatttcaatggtactaagcctttgaagaatgttttc 30201150  T
Q  127 tgtcaaatctctaggaagatcaagccaatttgg 159  Q
    ||| |  ||| ||||||| ||||||||||||||    
T  30201149 tgtaatgtctttaggaagttcaagccaatttgg 30201117  T

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Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 159
Target Start/End: Complemental strand, 30223175 - 30223041
Alignment:
Q  25 gcgccacatgagaggatcattgcaaatgttccaccaaagagggcaaactccgcatgcacttgtcaaaatttcaaatgcaccaagcctctgaaggatattt 124  Q
    |||||||||||||||||| ||||||||||||||||||  ||| || ||   || |||  |  ||| |||||||| || ||||||||| || || || |||    
T  30223175 gcgccacatgagaggatccttgcaaatgttccaccaataaggacacacattgcgtgccttcttcagaatttcaactggaccaagcctttggagaatgttt 30223076  T
Q  125 gatgtcaaatctctaggaagatcaagccaatttgg 159  Q
    ||||| |  ||||||||||| ||||||||||||||    
T  30223075 gatgtgatgtctctaggaagctcaagccaatttgg 30223041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 159
Target Start/End: Complemental strand, 30230416 - 30230282
Alignment:
Q  25 gcgccacatgagaggatcattgcaaatgttccaccaaagagggcaaactccgcatgcacttgtcaaaatttcaaatgcaccaagcctctgaaggatattt 124  Q
    |||||||||| ||||||| ||||||||| ||||||||  ||| || ||   || |||| ||||||||||||| |   |||||||||| || || || |||    
T  30230416 gcgccacatgcgaggatccttgcaaatgctccaccaataaggacacacattgcgtgcatttgtcaaaatttcgaccacaccaagcctttggagaatgttt 30230317  T
Q  125 gatgtcaaatctctaggaagatcaagccaatttgg 159  Q
    ||||| |  ||||||||||| ||||||||||||||    
T  30230316 gatgtaatgtctctaggaagctcaagccaatttgg 30230282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 98
Target Start/End: Complemental strand, 29751926 - 29751856
Alignment:
Q  28 ccacatgagaggatcattgcaaatgttccaccaaagagggcaaactccgcatgcacttgtcaaaatttcaa 98  Q
    ||||||||||||||| ||||||| ||||||||||||||| |||||    | ||||||||||| ||||||||    
T  29751926 ccacatgagaggatccttgcaaacgttccaccaaagaggacaaacattacgtgcacttgtcacaatttcaa 29751856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 159
Target Start/End: Complemental strand, 29856923 - 29856790
Alignment:
Q  26 cgccacatgagaggatcattgcaaatgttccaccaaagagggcaaactccgcatgcacttgtcaaaatttcaaatgcaccaagcctctgaaggatatttg 125  Q
    ||||||| ||||||||| || || |||| |||||| ||||| ||||||   ||||||||| |||  ||||||| || | ||||||| |||||||| ||||    
T  29856923 cgccacaggagaggatctttacatatgtcccaccatagaggacaaacttgacatgcacttttcacgatttcaattgtatcaagcctttgaaggatgtttg 29856824  T
Q  126 atgtcaaatctctaggaagatcaagccaatttgg 159  Q
     ||| |  |||||  |||| ||||||||||||||    
T  29856823 ctgtgatttctctcagaagttcaagccaatttgg 29856790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 84
Target Start/End: Complemental strand, 30239112 - 30239053
Alignment:
Q  25 gcgccacatgagaggatcattgcaaatgttccaccaaagagggcaaactccgcatgcact 84  Q
    |||||||||||||||||| ||||| ||||||||||| ||||| || |||  |||||||||    
T  30239112 gcgccacatgagaggatccttgcatatgttccaccatagaggacatactaggcatgcact 30239053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 98
Target Start/End: Complemental strand, 29649111 - 29649039
Alignment:
Q  26 cgccacatgagaggatcattgcaaatgttccaccaaagagggcaaactccgcatgcacttgtcaaaatttcaa 98  Q
    ||||||||||||||||| || |||||||||||| | ||||| || |||  ||||||| |||| | ||||||||    
T  29649111 cgccacatgagaggatccttacaaatgttccacgatagaggacatactaggcatgcatttgttacaatttcaa 29649039  T

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Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 25 - 159
Target Start/End: Original strand, 16644743 - 16644877
Alignment:
Q  25 gcgccacatgagaggatcattgcaaatgttccaccaaagagggcaaactccgcatgcacttgtcaaaatttcaaatgcaccaagcctctgaaggatattt 124  Q
    ||||||||||||||| || ||||||||||||||||| ||||  || |||  | |||||||||||| |||||||| ||||  |||||| ||||| || |||    
T  16644743 gcgccacatgagaggttccttgcaaatgttccaccatagagcacacactagggatgcacttgtcacaatttcaactgcattaagcctttgaagaatgttt 16644842  T
Q  125 gatgtcaaatctctaggaagatcaagccaatttgg 159  Q
      ||| | |||||||||||| ||||||||||||||    
T  16644843 tgtgtgatatctctaggaaggtcaagccaatttgg 16644877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 25 - 159
Target Start/End: Original strand, 17619104 - 17619238
Alignment:
Q  25 gcgccacatgagaggatcattgcaaatgttccaccaaagagggcaaactccgcatgcacttgtcaaaatttcaaatgcaccaagcctctgaaggatattt 124  Q
    ||||||||||||||| || ||||||||||||||||| ||||  || |||  | |||||||||||| |||||||| ||||  |||||| ||||| || |||    
T  17619104 gcgccacatgagaggttccttgcaaatgttccaccatagagcacacactagggatgcacttgtcacaatttcaactgcattaagcctttgaagaatgttt 17619203  T
Q  125 gatgtcaaatctctaggaagatcaagccaatttgg 159  Q
      ||| | |||||||||||| ||||||||||||||    
T  17619204 tgtgtgatatctctaggaaggtcaagccaatttgg 17619238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 159
Target Start/End: Original strand, 14934506 - 14934638
Alignment:
Q  27 gccacatgagaggatcattgcaaatgttccaccaaagagggcaaactccgcatgcacttgtcaaaatttcaaatgcaccaagcctctgaaggatatttga 126  Q
    |||||||| ||||||| ||| |||| ||||||||||||||||| |||   |||||||| | ||| |||||||  ||||||||||| || || || ||||     
T  14934506 gccacatgtgaggatccttgaaaatattccaccaaagagggcacacttgacatgcactagccaatatttcaatggcaccaagcctttggagaatgtttgc 14934605  T
Q  127 tgtcaaatctctaggaagatcaagccaatttgg 159  Q
     |||| |||||| ||||| ||||||||||||||    
T  14934606 agtcacatctcttggaagttcaagccaatttgg 14934638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 159
Target Start/End: Original strand, 16955662 - 16955801
Alignment:
Q  20 atagagcgccacatgagaggatcattgcaaatgttccaccaaagagggcaaactccgcatgcacttgtcaaaatttcaaatgcaccaagcctctgaagga 119  Q
    |||| |||||||||||||||||| |||||||| |||||||| | |||||| |||   ||| ||||||| | ||||||||  | | |||||||||| || |    
T  16955662 atagtgcgccacatgagaggatccttgcaaatattccaccataaagggcacacttgacatacacttgtgacaatttcaatagtatcaagcctctggagaa 16955761  T
Q  120 tatttgatgtcaaatctctaggaagatcaagccaatttgg 159  Q
    | |||  || ||||||| | || || ||||||||||||||    
T  16955762 tgtttattgccaaatcttttggtagttcaagccaatttgg 16955801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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