View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3857_high_47 (Length: 276)
Name: NF3857_high_47
Description: NF3857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3857_high_47 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 17 - 276
Target Start/End: Complemental strand, 46284590 - 46284331
Alignment:
| Q |
17 |
agtatgctgctaagctattgaaagaaaagaaagttgaagataagtggggagaacggcatgcataaatggaaaagacagacagagagaaaaaccatcaaat |
116 |
Q |
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| T |
46284590 |
agtatgctgctaagctattgaaagaaaagaaagttgaagataagtggggagaacggcatgcataaatggaaaagacagacagagagaaaaaccatcaaat |
46284491 |
T |
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| Q |
117 |
ttttgttagtgtactatgtaggtatagtgctttcaagtgtggatgtggactattaccattttgaaaaataagttgaggaaatcatgctgtgttttggatt |
216 |
Q |
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| T |
46284490 |
ttttgttagtgtactatgtaggtatagtgctttcaagtgtggatgtggactattaccattttgaaaaataagttgaggaaatcatgctgtgttttggatt |
46284391 |
T |
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| Q |
217 |
acaattggtcaatagggctttagagtttagaacatagatgccagtggcaagtacaagcac |
276 |
Q |
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| T |
46284390 |
acaattggtcaatagggctttagagtttagaacatagatgccggtggcaagtacaagcac |
46284331 |
T |
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