View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3857_high_48 (Length: 276)
Name: NF3857_high_48
Description: NF3857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3857_high_48 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 18 - 276
Target Start/End: Original strand, 44056521 - 44056779
Alignment:
| Q |
18 |
caccgaagataatgtcacgtcacatctatcagcattatgagatgatcacagnnnnnnngtgtttgaaaagaaaacaactaaccagaatttctgctatgac |
117 |
Q |
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| T |
44056521 |
caccgaagataatgtcacgtcacatctatcagcattatgagatgatcacagtttttttgtgtttgaaaagaaaacaactaaccagaatttctgctatgac |
44056620 |
T |
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| Q |
118 |
gcgcggctggcgaaagggcttgagaacaaagacaaatatgcgagtggctgcaacaactaaggttaattgtaagatgaaaagtggcagagaaaattccaaa |
217 |
Q |
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| T |
44056621 |
gcgcggctggcgaaagggcttgagaacaaagacaaatatgcgagtggctgcaacaactaaggttaattgtaagatgaaaagtggcagagaaaattccaaa |
44056720 |
T |
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| Q |
218 |
gggctatctccttgccatattccattcgttgttatcatggctggtgcataacacactat |
276 |
Q |
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| T |
44056721 |
gggctatctccttgccatattccattcgttgttatcatggctggtgcataacacactat |
44056779 |
T |
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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 93 - 273
Target Start/End: Original strand, 39238528 - 39238708
Alignment:
| Q |
93 |
aactaaccagaatttctgctatgacgcgcggctggcgaaagggcttgagaacaaagacaaatatgcgagtggctgcaacaactaaggttaattgtaagat |
192 |
Q |
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| T |
39238528 |
aactaaccaagatttcggctataacgcgtggctgacgaatgggcttgagtatgaagacgaagattcgggtggcaataacaactaaaataacttgtagaat |
39238627 |
T |
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| Q |
193 |
gaaaagtggcagagaaaattccaaagggctatctccttgccatattccattcgttgttatcatggctggtgcataacacac |
273 |
Q |
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| T |
39238628 |
gaagagaggaagagaatagtctaaagggttatctccttgccatattccatttgttgttatcatagttggtgaataacacac |
39238708 |
T |
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