View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3857_high_55 (Length: 250)
Name: NF3857_high_55
Description: NF3857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3857_high_55 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 25259598 - 25259365
Alignment:
| Q |
1 |
ccctagcttcttctctaacccttctttgctcttccctttctctccatctttgttccatcattatcctctcattctccaatgcttccattctttgtctcca |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25259598 |
ccctagcttcttctctaatccttctttgttcttccctttctctccatctttgttccatcattatcctctcattctccaatgcttccattctttgtctcca |
25259499 |
T |
|
| Q |
101 |
ctccatctccttcaatctcctctcattctctcttgcctcaaatgcttccatccattgagcttccatttgcatttgttgcctcataaactcctcaagaatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25259498 |
ctccatctccttcaatctcctctcattctctcttgcttcaaatgcttccatccattgagcttccatttgcatttgttgcctcataaactcctcaagaatc |
25259399 |
T |
|
| Q |
201 |
tccttcaaattgttgctaccattgttatcatttc |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
25259398 |
tccttcaaattgttgctaccattgttatcatttc |
25259365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 4724738 - 4724949
Alignment:
| Q |
1 |
ccctagcttcttctctaacccttctttgctcttccctttctctccatctttgttccatcattatcctctcattctccaatgcttccattctttgtctcca |
100 |
Q |
| |
|
|||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||| ||||||||| |
|
|
| T |
4724738 |
ccctagcttcttctctaatcctcctttgttcttccctttctctccatctttgttccatcaatatcctctcattctcaagcatttccatttgttgtctcca |
4724837 |
T |
|
| Q |
101 |
ctccatctccttcaatctcctctcattctctcttgcctcaaatgcttccatccattgagcttccatttgcatttgttgcctcataaactcctcaagaatc |
200 |
Q |
| |
|
|||||||||| |||| ||||| ||||||||||| || |||||||||||||||||||| ||||| ||||||| |||||| ||||| ||||| || | ||| |
|
|
| T |
4724838 |
ctccatctccctcaacctcctttcattctctctagcttcaaatgcttccatccattgtgcttcaatttgcaattgttgtctcatgaactcatccaaaatt |
4724937 |
T |
|
| Q |
201 |
tccttcaaattg |
212 |
Q |
| |
|
|||||||||||| |
|
|
| T |
4724938 |
tccttcaaattg |
4724949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University