View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3857_high_63 (Length: 242)
Name: NF3857_high_63
Description: NF3857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3857_high_63 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 8 - 242
Target Start/End: Complemental strand, 41999189 - 41998943
Alignment:
| Q |
8 |
aaggggcaaaatcgtcacataactcaaattattcaacactatataataactacgttgtcagaacctcaaactcaaaccccatgcagaaactgtagtccac |
107 |
Q |
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| T |
41999189 |
aaggggcaaaatcgtcacataactcaaattattcaacactatataataactacgttgtcagaacctcaaactcaaaccccatgcagaaactgtagttcac |
41999090 |
T |
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| Q |
108 |
cgcaacaccataaactaagttcatcattaatttcatttcagcata------------tataatataaactttatactataattaaatcctcaatttcaac |
195 |
Q |
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| T |
41999089 |
cgcaacaccataaactaagttcatcattaatttcatttcagcatatatatatatatatataatataaactttatactataattaaatcctcaatttcaac |
41998990 |
T |
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| Q |
196 |
catgagttgcgctacgtttttccaaactatatccgtcgcagtaatac |
242 |
Q |
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| T |
41998989 |
catgagtagcgttaggtttttccaaactatctccgtcgcagcaatac |
41998943 |
T |
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