View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3857_high_69 (Length: 237)
Name: NF3857_high_69
Description: NF3857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3857_high_69 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 15245593 - 15245372
Alignment:
| Q |
1 |
actctgcatagtttattgtgtttttactctcttttattttcactta-tctattatgtttgttttaaaagaagtaaaaagaatatgattgtctcagaaatt |
99 |
Q |
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| T |
15245593 |
actctgcatagtttattgtgtttttactctcttttattttcacttactctattgtatttgttttaaaagaagtaaaaagaatatgattgtctcagaagtt |
15245494 |
T |
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| Q |
100 |
ttaacaaaatagttgtgcaaatttttgtaggtgagttgtgcaaaattagtaatctaattgttgtcacaaaataatctatttaatatagggttataatttt |
199 |
Q |
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| T |
15245493 |
ttaacaaaatagttgtacaaatttttataggtgagttgtgcaaaattattaatctaattgttgtcacaaaataatctatttaatatagggttataatttt |
15245394 |
T |
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| Q |
200 |
gtttagaattccataaaagttg |
221 |
Q |
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|||||||||||||||||||||| |
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| T |
15245393 |
gtttagaattccataaaagttg |
15245372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 76 - 204
Target Start/End: Complemental strand, 15273479 - 15273348
Alignment:
| Q |
76 |
aagaatatgattgtctcagaaattttaacaaaatagttgtgcaaat--ttttgtaggtgagttgtgcaaa-attagtaatctaattgttgtcacaaaata |
172 |
Q |
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||||||||||||||| || ||||| | ||||||||||||| ||||| |||| |||||||||||| |||| |||| || |||||||||||||| |||||| |
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| T |
15273479 |
aagaatatgattgtcccaaaaattatcacaaaatagttgttcaaatatttttttaggtgagttgtacaaatattattactctaattgttgtcataaaata |
15273380 |
T |
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| Q |
173 |
atctatttaatatagggttataattttgttta |
204 |
Q |
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| T |
15273379 |
atgtatttaatatagggctataattttgttta |
15273348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 132 - 221
Target Start/End: Complemental strand, 15260678 - 15260588
Alignment:
| Q |
132 |
gagttgtgcaaa-attagtaatctaattgttgtcacaaaataatctatttaatatagggttataattttgtttagaattccataaaagttg |
221 |
Q |
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||||||| |||| |||| || ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
15260678 |
gagttgtacaaatattattattctaattgttgtcacaaaataatgtatttaatatagggctataattttgtttagaattccatagaagttg |
15260588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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