View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3857_high_76 (Length: 215)

Name: NF3857_high_76
Description: NF3857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3857_high_76
NF3857_high_76
[»] chr8 (3 HSPs)
chr8 (9-211)||(31387171-31387373)
chr8 (10-202)||(24924196-24924386)
chr8 (1-48)||(24924404-24924451)
[»] chr3 (5 HSPs)
chr3 (6-211)||(13822596-13822801)
chr3 (1-202)||(4264762-4264962)
chr3 (30-75)||(13822775-13822820)
chr3 (1-75)||(4264721-4264793)
chr3 (9-75)||(4264688-4264752)
[»] chr6 (3 HSPs)
chr6 (1-200)||(22052816-22053016)
chr6 (102-211)||(22352630-22352739)
chr6 (12-75)||(22052985-22053046)
[»] chr2 (2 HSPs)
chr2 (1-200)||(44363201-44363401)
chr2 (12-75)||(44363370-44363431)
[»] chr7 (3 HSPs)
chr7 (1-202)||(41546339-41546539)
chr7 (1-75)||(41546298-41546370)
chr7 (9-75)||(41546265-41546329)
[»] chr4 (6 HSPs)
chr4 (1-202)||(55039637-55039837)
chr4 (2-202)||(14055774-14055972)
chr4 (1-75)||(55039596-55039668)
chr4 (1-75)||(14055942-14056014)
chr4 (9-75)||(55039563-55039627)
chr4 (9-50)||(14056006-14056047)
[»] chr1 (11 HSPs)
chr1 (1-202)||(19151515-19151715)
chr1 (1-202)||(23678571-23678771)
chr1 (1-202)||(17224458-17224658)
chr1 (1-202)||(25871980-25872179)
chr1 (95-211)||(38245374-38245480)
chr1 (1-75)||(19151684-19151756)
chr1 (1-75)||(23678740-23678812)
chr1 (14-75)||(25871952-25872011)
chr1 (9-75)||(17224425-17224489)
chr1 (9-75)||(19151725-19151789)
chr1 (9-75)||(23678781-23678845)
[»] scaffold0008 (1 HSPs)
scaffold0008 (9-202)||(86473-86665)


Alignment Details
Target: chr8 (Bit Score: 171; Significance: 5e-92; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 9 - 211
Target Start/End: Original strand, 31387171 - 31387373
Alignment:
Q  9 gccgccgtctcctgctccatcttccgttcaaccttagccgcgcgtcgccgtctcctgctccatcttcgacgatctctttcacagtgttcctttttcaact 108  Q
    ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  31387171 gccgccgtctcctgctccatcttccgttcaaccctagccgcgcgccgccgtctcctgctccatctccgatgatctctttcacagtgttcctttttcaact 31387270  T
Q  109 caggtattttcttccatattcctcttcctcttggctgttacattttgtgatttatgtaaggtcttgactgagatcttgggtgatctaatgttctctgctc 208  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||    
T  31387271 caggtattttcttccatattcctcttcgtcttggctgttacattttgtgatttatgtaagttcttcactgagatcttgggtgatctaatgttctttgctc 31387370  T
Q  209 ctc 211  Q
    |||    
T  31387371 ctc 31387373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 10 - 202
Target Start/End: Complemental strand, 24924386 - 24924196
Alignment:
Q  10 ccgccgtctcctgctccatcttccgttcaaccttagccgcgcgtcgccgtctcctgctccatcttcgacgatctctttcacagtgttcctttttcaactc 109  Q
    ||||||| ||||||||||||||||| |||||| |||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  24924386 ccgccgtgtcctgctccatcttccgctcaaccctagc-gcgcgccgccgtctcctgctccatctccgacgatctctttcacagtgttcctttttgaactc 24924288  T
Q  110 aggtattttcttccatattcctcttcctcttggctgttacattttgtgatttatgtaaggtcttgactgagatcttgggtgatctaatgttct 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  24924287 aggtattttcttccatattcctcttcctcttggctgttacattttgtga-ttatgtaaggtcttgactgagatcttgggtgatctaatgttct 24924196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 24924451 - 24924404
Alignment:
Q  1 ctagccgcgccgccgtctcctgctccatcttccgttcaaccttagccg 48  Q
    |||||||| ||||||||||||||||||||||||||| |||| ||||||    
T  24924451 ctagccgcaccgccgtctcctgctccatcttccgttgaaccctagccg 24924404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 6 - 211
Target Start/End: Complemental strand, 13822801 - 13822596
Alignment:
Q  6 cgcgccgccgtctcctgctccatcttccgttcaaccttagccgcgcgtcgccgtctcctgctccatcttcgacgatctctttcacagtgttcctttttca 105  Q
    |||| ||||||||||||||||||||||| ||||||| |||||||  | |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  13822801 cgcgtcgccgtctcctgctccatcttccattcaaccctagccgctagccgccgtctcctgctccatctccgacgatctctttcacagtgttcctttttca 13822702  T
Q  106 actcaggtattttcttccatattcctcttcctcttggctgttacattttgtgatttatgtaaggtcttgactgagatcttgggtgatctaatgttctctg 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  13822701 actcaggtattttcttccatattcctcttcctcttggctgttacattttgtgatttatgtaaggtcttgactgagatcttgggtaatctaatgttctttg 13822602  T
Q  206 ctcctc 211  Q
    ||||||    
T  13822601 ctcctc 13822596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 4264762 - 4264962
Alignment:
Q  1 ctagccgcgccgccgtctcctgctccatcttccgttcaaccttagccgcgcgtcgccgtctcctgctccatcttcgacgatctctttcacagtgttcctt 100  Q
    ||||||||||||||||||||||| ||||||||| ||||||| |||| ||||| ||||||| |||||||||||| ||||||||| ||||||| ||||||||    
T  4264762 ctagccgcgccgccgtctcctgccccatcttccattcaaccctagc-gcgcgccgccgtcacctgctccatctccgacgatctgtttcacaatgttcctt 4264860  T
Q  101 tttcaactcaggtattttcttccatattcctcttcctcttggctgttacattttgtgatttatgtaaggtcttgactgagatcttgggtgatctaatgtt 200  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4264861 tttcaactaaggtattttctttcatattcctcttcctcttggctgttagattttgtgatttatgtaaggtcttgactgagatcttgggtgatctaatgtt 4264960  T
Q  201 ct 202  Q
    ||    
T  4264961 ct 4264962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 13822820 - 13822775
Alignment:
Q  30 ttccgttcaaccttagccgcgcgtcgccgtctcctgctccatcttc 75  Q
    |||||||||||| |||||||||||||||||||||||||||||||||    
T  13822820 ttccgttcaaccctagccgcgcgtcgccgtctcctgctccatcttc 13822775  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 4264721 - 4264793
Alignment:
Q  1 ctagccgcgccgccgtctcctgctccatcttccgttcaaccttagccgcgcgtcgccgtctcctgctccatcttc 75  Q
    ||||||||||||||||||  ||||||||||||||||  ||| |||||||||  ||||||||||||| ||||||||    
T  4264721 ctagccgcgccgccgtcttatgctccatcttccgttacaccctagccgcgc--cgccgtctcctgccccatcttc 4264793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 4264688 - 4264752
Alignment:
Q  9 gccgccgtctcctgctccatcttccgttcaaccttagccgcgcgtcgccgtctcctgctccatcttc 75  Q
    |||||||||||||| |||||||||| ||||||| |||||||||  ||||||||  ||||||||||||    
T  4264688 gccgccgtctcctgatccatcttccattcaaccctagccgcgc--cgccgtcttatgctccatcttc 4264752  T

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Target: chr6 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 22053016 - 22052816
Alignment:
Q  1 ctagccgcgccgccgtctcctgctccatcttccgttcaaccttagc-cgcgcgtcgccgtctcctgctccatcttcgacgatctctttcacagtgttcct 99  Q
    ||||||||  ||| ||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  22053016 ctagccgcatcgctgtctcctgctccatcttccgttcaaccctagcgcgcgcgccgccgtctcctgctccatctccgacgatctctttcacagtgttcct 22052917  T
Q  100 ttttcaactcaggtattttcttccatattcctcttcctcttggctgttacattttgtgatttatgtaaggtcttgactgagatcttgggtgatctaatgt 199  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22052916 ttttcaacttaggtattttcttccatattcctcttcctcttggctgttacattttgtgatttatgtaaggtcttgactgagatcttgggtgatctaatgt 22052817  T
Q  200 t 200  Q
    |    
T  22052816 t 22052816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 102 - 211
Target Start/End: Original strand, 22352630 - 22352739
Alignment:
Q  102 ttcaactcaggtattttcttccatattcctcttcctcttggctgttacattttgtgatttatgtaaggtcttgactgagatcttgggtgatctaatgttc 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  22352630 ttcaactcaggtattttcttccatattcctcttcctcttggctgttacattttgtgatttatgtaaggtcttcactgagatcttgggtgatctaatgttc 22352729  T
Q  202 tctgctcctc 211  Q
    | ||||||||    
T  22352730 tttgctcctc 22352739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 22053046 - 22052985
Alignment:
Q  12 gccgtctcctgctccatcttccgttcaaccttagccgcgcgtcgccgtctcctgctccatcttc 75  Q
    |||||||||||||||||||||||||||||| ||||  ||| |||| ||||||||||||||||||    
T  22053046 gccgtctcctgctccatcttccgttcaaccctagc--cgcatcgctgtctcctgctccatcttc 22052985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 44363401 - 44363201
Alignment:
Q  1 ctagccgcgccgccgtctcctgctccatcttccgttcaaccttagc-cgcgcgtcgccgtctcctgctccatcttcgacgatctctttcacagtgttcct 99  Q
    ||||||||  ||| ||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  44363401 ctagccgcatcgctgtctcctgctccatcttccgttcaaccctagcgcgcgcgccgccgtctcctgctccatctccgacgatctctttcacagtgttcct 44363302  T
Q  100 ttttcaactcaggtattttcttccatattcctcttcctcttggctgttacattttgtgatttatgtaaggtcttgactgagatcttgggtgatctaatgt 199  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44363301 ttttcaacttaggtattttcttccatattcctcttcctcttggctgttacattttgtgatttatgtaaggtcttgactgagatcttgggtgatctaatgt 44363202  T
Q  200 t 200  Q
    |    
T  44363201 t 44363201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 44363431 - 44363370
Alignment:
Q  12 gccgtctcctgctccatcttccgttcaaccttagccgcgcgtcgccgtctcctgctccatcttc 75  Q
    |||||||||||||||||||||||||||||| ||||  ||| |||| ||||||||||||||||||    
T  44363431 gccgtctcctgctccatcttccgttcaaccctagc--cgcatcgctgtctcctgctccatcttc 44363370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 158; Significance: 3e-84; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 41546339 - 41546539
Alignment:
Q  1 ctagccgcgccgccgtctcctgctccatcttccgttcaaccttagccgcgcgtcgccgtctcctgctccatcttcgacgatctctttcacagtgttcctt 100  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||| ||||| ||||||| |||||||||||| ||||||||| ||||||||||||||||    
T  41546339 ctagccgcgccgccgtctcctgctccatcttccattcaaccctagc-gcgcgccgccgtcacctgctccatctccgacgatctgtttcacagtgttcctt 41546437  T
Q  101 tttcaactcaggtattttcttccatattcctcttcctcttggctgttacattttgtgatttatgtaaggtcttgactgagatcttgggtgatctaatgtt 200  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41546438 tttcaactaaggtattttctttcatattcctcttcctcttggctgttagattttgtgatttatgtaaggtcttgactgagatcttgggtgatctaatgtt 41546537  T
Q  201 ct 202  Q
    ||    
T  41546538 ct 41546539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 41546298 - 41546370
Alignment:
Q  1 ctagccgcgccgccgtctcctgctccatcttccgttcaaccttagccgcgcgtcgccgtctcctgctccatcttc 75  Q
    ||||||||||||||||||  ||||||||||||||||  ||| |||||||||  ||||||||||||||||||||||    
T  41546298 ctagccgcgccgccgtcttatgctccatcttccgttacaccctagccgcgc--cgccgtctcctgctccatcttc 41546370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 41546265 - 41546329
Alignment:
Q  9 gccgccgtctcctgctccatcttccgttcaaccttagccgcgcgtcgccgtctcctgctccatcttc 75  Q
    |||||||||||||| |||||||||| ||||||| |||||||||  ||||||||  ||||||||||||    
T  41546265 gccgccgtctcctgatccatcttccattcaaccctagccgcgc--cgccgtcttatgctccatcttc 41546329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 55039637 - 55039837
Alignment:
Q  1 ctagccgcgccgccgtctcctgctccatcttccgttcaaccttagccgcgcgtcgccgtctcctgctccatcttcgacgatctctttcacagtgttcctt 100  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||| ||||| ||||||| |||||||||||| ||||||||| ||||||||||||||||    
T  55039637 ctagccgcgccgccgtctcctgctccatcttccattcaaccctagc-gcgcgccgccgtcacctgctccatctccgacgatctgtttcacagtgttcctt 55039735  T
Q  101 tttcaactcaggtattttcttccatattcctcttcctcttggctgttacattttgtgatttatgtaaggtcttgactgagatcttgggtgatctaatgtt 200  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55039736 tttcaactaaggtattttctttcatattcctcttcctcttggctgttagattttgtgatttatgtaaggtcttgactgagatcttgggtgatctaatgtt 55039835  T
Q  201 ct 202  Q
    ||    
T  55039836 ct 55039837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 2 - 202
Target Start/End: Complemental strand, 14055972 - 14055774
Alignment:
Q  2 tagccgcgccgccgtctcctgctccatcttccgttcaaccttagccgcgcgtcgccgtctcctgctccatcttcgacgatctctttcacagtgttccttt 101  Q
    |||||||||||||||||| || |||||||||| ||||||   ||| ||||| ||||||| |||||||||||| ||||||||||||||||||||||| |||    
T  14055972 tagccgcgccgccgtctcttgttccatcttccattcaacgcaagc-gcgcgccgccgtcacctgctccatctccgacgatctctttcacagtgttc-ttt 14055875  T
Q  102 ttcaactcaggtattttcttccatattcctcttcctcttggctgttacattttgtgatttatgtaaggtcttgactgagatcttgggtgatctaatgttc 201  Q
    ||||| ||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14055874 ttcaagtcaggtattttctttaatattcctcttcctcttggctgttagattttgtgatttatgtaaggtcttgactgagatcttgggtgatctaatgttc 14055775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 55039596 - 55039668
Alignment:
Q  1 ctagccgcgccgccgtctcctgctccatcttccgttcaaccttagccgcgcgtcgccgtctcctgctccatcttc 75  Q
    ||||||||||||||||||  ||||||||||||| ||  ||| |||||||||  ||||||||||||||||||||||    
T  55039596 ctagccgcgccgccgtcttatgctccatcttccattacaccctagccgcgc--cgccgtctcctgctccatcttc 55039668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 14056014 - 14055942
Alignment:
Q  1 ctagccgcgccgccgtctcctgctccatcttccgttcaaccttagccgcgcgtcgccgtctcctgctccatcttc 75  Q
    ||||||||| || |||||  ||||||||||||||||||||| |||||||||  ||||||||| || |||||||||    
T  14056014 ctagccgcggcgtcgtcttttgctccatcttccgttcaaccgtagccgcgc--cgccgtctcttgttccatcttc 14055942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 55039563 - 55039627
Alignment:
Q  9 gccgccgtctcctgctccatcttccgttcaaccttagccgcgcgtcgccgtctcctgctccatcttc 75  Q
    |||||||||||||| |||||||||| ||||||| |||||||||  ||||||||  ||||||||||||    
T  55039563 gccgccgtctcctgatccatcttccattcaaccctagccgcgc--cgccgtcttatgctccatcttc 55039627  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 14056047 - 14056006
Alignment:
Q  9 gccgccgtctcctgctccatcttccgttcaaccttagccgcg 50  Q
    ||||||||||||||||||||||||||| ||||| ||||||||    
T  14056047 gccgccgtctcctgctccatcttccgtccaaccctagccgcg 14056006  T

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Target: chr1 (Bit Score: 158; Significance: 3e-84; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 19151715 - 19151515
Alignment:
Q  1 ctagccgcgccgccgtctcctgctccatcttccgttcaaccttagccgcgcgtcgccgtctcctgctccatcttcgacgatctctttcacagtgttcctt 100  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||| ||||| ||||||| |||||||||||| ||||||||| ||||||||||||||||    
T  19151715 ctagccgcgccgccgtctcctgctccatcttccattcaaccctagc-gcgcgccgccgtcacctgctccatctccgacgatctgtttcacagtgttcctt 19151617  T
Q  101 tttcaactcaggtattttcttccatattcctcttcctcttggctgttacattttgtgatttatgtaaggtcttgactgagatcttgggtgatctaatgtt 200  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19151616 tttcaactaaggtattttctttcatattcctcttcctcttggctgttagattttgtgatttatgtaaggtcttgactgagatcttgggtgatctaatgtt 19151517  T
Q  201 ct 202  Q
    ||    
T  19151516 ct 19151515  T

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Target: chr1; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 23678771 - 23678571
Alignment:
Q  1 ctagccgcgccgccgtctcctgctccatcttccgttcaaccttagccgcgcgtcgccgtctcctgctccatcttcgacgatctctttcacagtgttcctt 100  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||| ||||| ||||||| |||||||||||| ||||||||| ||||||||||||||||    
T  23678771 ctagccgcgccgccgtctcctgctccatcttccattcaaccctagc-gcgcgccgccgtcacctgctccatctccgacgatctgtttcacagtgttcctt 23678673  T
Q  101 tttcaactcaggtattttcttccatattcctcttcctcttggctgttacattttgtgatttatgtaaggtcttgactgagatcttgggtgatctaatgtt 200  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23678672 tttcaactaaggtattttctttcatattcctcttcctcttggctgttagattttgtgatttatgtaaggtcttgactgagatcttgggtgatctaatgtt 23678573  T
Q  201 ct 202  Q
    ||    
T  23678572 ct 23678571  T

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Target: chr1; HSP #3
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 17224458 - 17224658
Alignment:
Q  1 ctagccgcgccgccgtctcctgctccatcttccgttcaaccttagccgcgcgtcgccgtctcctgctccatcttcgacgatctctttcacagtgttcctt 100  Q
    ||||||||| || ||||| |||||||||||||| ||||||| |||| | ||| ||||||| |||||||||||| ||||||||||||| ||||||||||||    
T  17224458 ctagccgcggcggcgtcttctgctccatcttccattcaaccctagc-gagcgccgccgtcacctgctccatctccgacgatctcttttacagtgttcctt 17224556  T
Q  101 tttcaactcaggtattttcttccatattcctcttcctcttggctgttacattttgtgatttatgtaaggtcttgactgagatcttgggtgatctaatgtt 200  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17224557 tttcaactcaggtattttctttcatattcctcttcctcttggctgttagattttgtgatttatgtaaggtcttgactgagatcttgggtgatctaatgtt 17224656  T
Q  201 ct 202  Q
    ||    
T  17224657 ct 17224658  T

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Target: chr1; HSP #4
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 25871980 - 25872179
Alignment:
Q  1 ctagccgcgccgccgtctcctgctccatcttccgttcaaccttagccgcgcgtcgccgtctcctgctccatcttcgacgatctctttcacagtgttcctt 100  Q
    |||||| |||||||||||||||||| ||||||| ||||||| |||| ||||| ||||||| |||||||||||| |||| |||||||||||||||||||||    
T  25871980 ctagcctcgccgccgtctcctgctcaatcttccattcaaccctagc-gcgcgccgccgtcacctgctccatctccgacaatctctttcacagtgttcctt 25872078  T
Q  101 tttcaactcaggtattttcttccatattcctcttcctcttggctgttacattttgtgatttatgtaaggtcttgactgagatcttgggtgatctaatgtt 200  Q
     |||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25872079 cttcaactcag-tattttctttcatattcctcttcctcttggctgttagattttgtgatttatgtaaggtcttgactgagatcttgggtgatctaatgtt 25872177  T

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Target: chr1; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 95 - 211
Target Start/End: Complemental strand, 38245480 - 38245374
Alignment:
Q  95 ttcctttttcaactcaggtattttcttccatattcctcttcctcttggctgttacattttgtgatttatgtaaggtcttgactgagatcttgggtgatct 194  Q
    ||||||||||||||||||||||||||||||||||||      |||||| |||||||||||||||||||||||||||||| |||    | |||| ||||||    
T  38245480 ttcctttttcaactcaggtattttcttccatattcc------tcttggttgttacattttgtgatttatgtaaggtcttcact----ttttggatgatct 38245391  T
Q  195 aatgttctctgctcctc 211  Q
    |||||||| || |||||    
T  38245390 aatgttctttgttcctc 38245374  T

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Target: chr1; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 19151756 - 19151684
Alignment:
Q  1 ctagccgcgccgccgtctcctgctccatcttccgttcaaccttagccgcgcgtcgccgtctcctgctccatcttc 75  Q
    ||||||||||||||||||  ||||||||||||||||  ||| |||||||||  ||||||||||||||||||||||    
T  19151756 ctagccgcgccgccgtcttatgctccatcttccgttacaccctagccgcgc--cgccgtctcctgctccatcttc 19151684  T

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Target: chr1; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 23678812 - 23678740
Alignment:
Q  1 ctagccgcgccgccgtctcctgctccatcttccgttcaaccttagccgcgcgtcgccgtctcctgctccatcttc 75  Q
    ||||||||||||||||||  ||||||||||||||||  ||| |||||||||  ||||||||||||||||||||||    
T  23678812 ctagccgcgccgccgtcttatgctccatcttccgttacaccctagccgcgc--cgccgtctcctgctccatcttc 23678740  T

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Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 25871952 - 25872011
Alignment:
Q  14 cgtctcctgctccatcttccgttcaaccttagccgcgcgtcgccgtctcctgctccatcttc 75  Q
    |||||||||||||||||||||||||||| ||||| |||  ||||||||||||||| ||||||    
T  25871952 cgtctcctgctccatcttccgttcaaccctagcctcgc--cgccgtctcctgctcaatcttc 25872011  T

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Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 17224425 - 17224489
Alignment:
Q  9 gccgccgtctcctgctccatcttccgttcaaccttagccgcgcgtcgccgtctcctgctccatcttc 75  Q
    |||||||||||| |||||||||||||||||||| ||||  |||| || ||||| |||||||||||||    
T  17224425 gccgccgtctcccgctccatcttccgttcaaccctagc--cgcggcggcgtcttctgctccatcttc 17224489  T

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Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 19151789 - 19151725
Alignment:
Q  9 gccgccgtctcctgctccatcttccgttcaaccttagccgcgcgtcgccgtctcctgctccatcttc 75  Q
    |||||||||||||| |||||||||| ||||||| |||||||||  ||||||||  ||||||||||||    
T  19151789 gccgccgtctcctgatccatcttccattcaaccctagccgcgc--cgccgtcttatgctccatcttc 19151725  T

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Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 23678845 - 23678781
Alignment:
Q  9 gccgccgtctcctgctccatcttccgttcaaccttagccgcgcgtcgccgtctcctgctccatcttc 75  Q
    |||||||||||||| |||||||||| ||||||| |||||||||  ||||||||  ||||||||||||    
T  23678845 gccgccgtctcctgatccatcttccattcaaccctagccgcgc--cgccgtcttatgctccatcttc 23678781  T

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Target: scaffold0008 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 9 - 202
Target Start/End: Original strand, 86473 - 86665
Alignment:
Q  9 gccgccgtctcctgctccatcttccgttcaaccttagccgcgcgtcgccgtctcctgctccatcttcgacgatctctttcacagtgttcctttttcaact 108  Q
    |||| ||||||||||| |||||||||||| ||| ||||  |||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  86473 gccgtcgtctcctgcttcatcttccgttcgaccctagca-cgcgccgccgtctcctgctctatctccgacgatctctttcacagtgttcctttttcaact 86571  T
Q  109 caggtattttcttccatattcctcttcctcttggctgttacattttgtgatttatgtaaggtcttgactgagatcttgggtgatctaatgttct 202  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  86572 caggtattttcttccatattcctcttcgtcttggctgttacattttgtgatttatgtaaggtcttgactgagatcttgggtgatctaatgttct 86665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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