View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3857_high_9 (Length: 529)
Name: NF3857_high_9
Description: NF3857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3857_high_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 19 - 406
Target Start/End: Original strand, 41479631 - 41480018
Alignment:
| Q |
19 |
actaccattctct--gagaaggaaactgttccctcacgagcccttcgtcgcttataggagaaattcgtattgaactacttaagatnnnnnnnnntatcag |
116 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
41479631 |
actaccattctctttgagaaggaaactgttccctcgcgagcccttcgtcgcttataggagaaattcgtattgaactacttaagataaaaaaaa--atcag |
41479728 |
T |
|
| Q |
117 |
tagttgaactcaactttcgtgtggatgaagtttacaacggggttgatttacttattggactcttcagagaagcatttagaagactttaagtccacttatg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41479729 |
tagttgaactcaactttcgtgtggatgaagtttacaacggggttgatttacttattggactcttcagagaagcatttagaagactttaagtccacttatg |
41479828 |
T |
|
| Q |
217 |
ctagttctagttcttgaagttgtaatcttatgtaatgaaacctgttgagaagtaatgaaaagttaatttctggaatcctttcttttaaattggtatcagt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41479829 |
ctagttctagttcttgaagttgtaatcttatgtaatgaaacctgttgagaagtaatgaaaagttaatttctggaatcctttcttttaaattggtatcagt |
41479928 |
T |
|
| Q |
317 |
tttctaagttgacatctcctcatgcctttttatcctctgtcgtctcttccacttagactcatgtagtttcagtttgcctttccgtttttg |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41479929 |
tttctaagttgacatctcctcatgcctttttatcctctgtcgtctcttccacttagactcatgtagtttcagtttgcctttccgtttttg |
41480018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 101
Target Start/End: Original strand, 41472357 - 41472428
Alignment:
| Q |
31 |
tgagaaggaaactgttccctcacgagcccttcgtcgc-ttataggagaaattcgtattgaactacttaagat |
101 |
Q |
| |
|
||||||||||| ||||||||| | || |||||||| | |||||||||||||||||| || ||||||| |||| |
|
|
| T |
41472357 |
tgagaaggaaattgttccctcgccagaccttcgtcacattataggagaaattcgtagtgtactactttagat |
41472428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 208
Target Start/End: Complemental strand, 16407054 - 16406879
Alignment:
| Q |
31 |
tgagaaggaaactgttccctcacgagcccttcgtcgctt-ataggagaaattcgtattgaactacttaagatnnnnnnnnntatcagtagttgaactcaa |
129 |
Q |
| |
|
||||||||||| ||||||||||| || |||||||| | | |||||||||||||||| |||||||||| |||| ||||||| ||||||| |
|
|
| T |
16407054 |
tgagaaggaaattgttccctcaccagaccttcgtcacatcataggagaaattcgtagtgaactactttagataaaaaaat---tcagtag---aactcaa |
16406961 |
T |
|
| Q |
130 |
ctttcgtgtggatgaagtttacaacggggttgatttacttattggac---tcttcagagaagcatttagaagactttaagtc |
208 |
Q |
| |
|
|||||||||||| ||| | |||| | || |||||||||||| ||||| |||||||||||||||| |||| ||||||||| |
|
|
| T |
16406960 |
ctttcgtgtggacgaaatctacagcaggcttgatttacttactggactcttcttcagagaagcattaagaaagctttaagtc |
16406879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 425 - 479
Target Start/End: Original strand, 24084511 - 24084564
Alignment:
| Q |
425 |
aaataaagacataagtcataactaagaaatccaaactactttctggttcatcctc |
479 |
Q |
| |
|
||||||||||||||| ||||||| | |||||| ||||||||||| |||||||||| |
|
|
| T |
24084511 |
aaataaagacataag-cataactcataaatcctaactactttctagttcatcctc |
24084564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University