View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3857_low_1 (Length: 986)
Name: NF3857_low_1
Description: NF3857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3857_low_1 |
 | |
|
| [»] scaffold0181 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0181 (Bit Score: 235; Significance: 1e-129; HSPs: 2)
Name: scaffold0181
Description:
Target: scaffold0181; HSP #1
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 15 - 312
Target Start/End: Original strand, 7144 - 7445
Alignment:
| Q |
15 |
cacagagaccacgcttagttttgatattgctcaaatccacagaagttcaaaatcgtgtttgtaattgatcacagttaaaatataacaagatagagaaagt |
114 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7144 |
cacagtgaccacacttagttttgatattgctcaaatccacagaagttcaaaatcgtgtttgtaattgatcacagttaaaatataacaagatagagaaagt |
7243 |
T |
|
| Q |
115 |
tgtgctaggattagtattcaaaaatattttcatgtaatgcttcctagtaatcgttcgtttactttttatgatttagatgtaact-----ccacctatcca |
209 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
7244 |
tgtgctaggattagcattcaaaaatattttcatgtaatgtttcctagtaatcgttcgtttattttttatgatttagatgtaactccaccccacctatcca |
7343 |
T |
|
| Q |
210 |
tcaacatacatctccattcctaaaaaacgacgcgagattcatttgaatcaacttacttcagatgctcggtggcaaaataactaattgtttcaaatgaata |
309 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
7344 |
tcaacatacatctccattcctagaaaacgacgcgagattca-ttgaatcagcttacttgagatgctcggtggcaaaataacaaattgtttcaaatgcata |
7442 |
T |
|
| Q |
310 |
cat |
312 |
Q |
| |
|
||| |
|
|
| T |
7443 |
cat |
7445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0181; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 769 - 918
Target Start/End: Original strand, 7443 - 7598
Alignment:
| Q |
769 |
cattaggcgcattgatgctcgcctagcgaatcgagg--------atgaaggaaaaagccatatgtcttctgatatttcttgaaactgtcttagcttgcat |
860 |
Q |
| |
|
||||||||| |||||||||||||||||||||| || ||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7443 |
cattaggcgtattgatgctcgcctagcgaatcaagctttcttcaatggagggaaaagccat--gtcttctgatatttcttgaaactgtcttagcttgcat |
7540 |
T |
|
| Q |
861 |
agcataatgtttctctcctagcaattaactttagaaagtcctcctgcaactcactgtt |
918 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7541 |
agcaggctgtttttctcctagcaattaactttagaaagtcctcctgcaactcactgtt |
7598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000004; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 302
Target Start/End: Original strand, 23390955 - 23391079
Alignment:
| Q |
174 |
tactttttatgatttagatgtaactccacctatccatcaacatacatctccattcctaaaaaacgacgcgagattcatttgaatcaacttacttcagatg |
273 |
Q |
| |
|
||||||||||| || |||| ||||||||| ||||| |||||||||| ||||| |||| | ||||||||||||||| ||||| ||| | ||||| | | |
|
|
| T |
23390955 |
tactttttatgcttcagatataactccacttatccctcaacatacacctccactcct---atacgacgcgagattca-ttgaaccaattgacttctcagg |
23391050 |
T |
|
| Q |
274 |
ctcggtggcaaaataactaattgtttcaa |
302 |
Q |
| |
|
||| ||||||||||| || ||| |||||| |
|
|
| T |
23391051 |
ctcagtggcaaaatagcttattatttcaa |
23391079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 307 - 387
Target Start/End: Original strand, 31611676 - 31611758
Alignment:
| Q |
307 |
atacatgaatatagacctgaccggtattcctaaattaatagtata--tatacatgattcaaacaatgtcccttagataataag |
387 |
Q |
| |
|
|||||||||||||| | | |||| |||| ||| | | |||||||| ||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
31611676 |
atacatgaatataggcataaccgttatttctagagtgatagtatacatatacatgatttaaacgatgtcccttagataataag |
31611758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 120
Target Start/End: Original strand, 31611454 - 31611484
Alignment:
| Q |
90 |
taaaatataacaagatagagaaagttgtgct |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
31611454 |
taaaatataacaagatagagaaagttgtgct |
31611484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 50049304 - 50049347
Alignment:
| Q |
15 |
cacagagaccacgcttagttttgatattgctcaaatccacagaa |
58 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
50049304 |
cacatagaccacacttagttttgatattgctcaaatccagagaa |
50049347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 702 - 788
Target Start/End: Original strand, 50050722 - 50050812
Alignment:
| Q |
702 |
taaattatgagtgatgaaaatgagaaaatctatttacaactc----tataatgtttctgcaagttaaggttcattaggcgcattgatgctc |
788 |
Q |
| |
|
||||||| |||||| ||||||||||||| ||||||||| |||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
50050722 |
taaattacaagtgataaaaatgagaaaattgtattacaactctaaatataatatttctgcaagttaaggtttgataggcgcattgatgctc |
50050812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 583 - 653
Target Start/End: Complemental strand, 9199278 - 9199208
Alignment:
| Q |
583 |
gagcataactaacaagagaaggttgacatgtgttaaaaaagcatcaacaagcttaaatccaagctccatag |
653 |
Q |
| |
|
||||||||||||||||| |||||||| | ||||| ||| |||||||||||| |||| ||||||||||| |
|
|
| T |
9199278 |
gagcataactaacaagataaggttgataggtgttggggaagaatcaacaagcttgaatctaagctccatag |
9199208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 576 - 649
Target Start/End: Complemental strand, 28609082 - 28609010
Alignment:
| Q |
576 |
ccatgtcgagcataactaacaagagaaggttgacatgtgttaaaaaagcatcaacaagcttaaatccaagctcc |
649 |
Q |
| |
|
|||||| || ||||||||||||||||||||||| | |||| | ||||||||| |||||| |||||||||||| |
|
|
| T |
28609082 |
ccatgtagaacataactaacaagagaaggttgaaagatgttggagaagcatcaa-aagcttgaatccaagctcc |
28609010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University