View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3857_low_10 (Length: 501)
Name: NF3857_low_10
Description: NF3857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3857_low_10 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 218 - 501
Target Start/End: Original strand, 18603369 - 18603650
Alignment:
| Q |
218 |
gttatcgtccaccaggatatcagttgacgtattcaccacttccaaaaggggagtagaaatgaaaatacaagcaaaatcaagcctcgctttgtccaccgta |
317 |
Q |
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| T |
18603369 |
gttaccgtccaccaggatatcagt-gacgtattcaccacttccaaaaggggagtagaaatgaaaatacaagcaaaatcaagcctcgctttgtccac-gta |
18603466 |
T |
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| Q |
318 |
caatcatcggcccaaatgaatcttccatacttcgaaacacataatatgaaaaacaattcattccatgcatgaacgggagtactatacacatggatccatg |
417 |
Q |
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| T |
18603467 |
caatcatcggcccgaatgaatcttccatacttcgaaacacataatatgaaaaacaattcattccatgcatgaacaggagtaccatacacacggatccatg |
18603566 |
T |
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| Q |
418 |
ctccctgttcataccatgcatcttttgatgaccatttatgcaaatcagagactaacatactaaacaagtcgcaagcatatcgac |
501 |
Q |
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| T |
18603567 |
ctccctgttcataccatgcatcttttgatgaccatttatgcaaataagagaataacatactaaagaagtcgatagcatatcgac |
18603650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 18595004 - 18595213
Alignment:
| Q |
12 |
tcatcaacttgtggagtttccttagaacaccactccttatgaagatcattaattaaaacctccatctcctctggcacctcatccaactccggaacatcat |
111 |
Q |
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| T |
18595004 |
tcatcaacttgtggagtttccttagaacaccactccttatgaagatcattaattaaaacctccatctcctctggcacctcatccaactccggaacatcat |
18595103 |
T |
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| Q |
112 |
tttaataagacaactctttcttccgatattcagacacttcttccgacnnnnnnncatcatccccgagacaacaacctcactcctccaccaactgcaaagt |
211 |
Q |
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| T |
18595104 |
tttaatcagataactcttccttccgatattcagacacttcttccgacaaaaaaacatcctccccgagacaacaacctcactcctccaccaactgcaaagt |
18595203 |
T |
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| Q |
212 |
gtaattgtta |
221 |
Q |
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| T |
18595204 |
gtaattgtta |
18595213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 125; Significance: 4e-64; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 10 - 415
Target Start/End: Original strand, 5960719 - 5961123
Alignment:
| Q |
10 |
catcatcaacttgtggagtttccttagaacaccactccttatgaagatcattaattaaaacctccatctcctctggcacctcatccaactccggaacatc |
109 |
Q |
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| T |
5960719 |
catcttcagcttgaggattttccttagaacaccaatccttatgaagatcattgactaaaacctccatctcccctagcacctcatccaattccggaacatc |
5960818 |
T |
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| Q |
110 |
attttaataagacaactctttcttccgatattcagacacttcttccgacnnnnnnncatcatccccgagacaacaacctcactcctccaccaactgcaaa |
209 |
Q |
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| T |
5960819 |
attaaaatcagataccgcatccttcctagactcatccatatcttcttaaaaaattgtatcctccccgaggcaacaaccccactcctcctccaaattcaaa |
5960918 |
T |
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| Q |
210 |
gtgtaattgttatcgtccaccaggatatcagttgacgtattcaccacttccaaaaggggagtagaaatgaaaatacaagcaaaatcaagcctcgctttgt |
309 |
Q |
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| T |
5960919 |
gtgtaattgagacc-tccacaaggatatcccttgacgtattcactacttccaaaaggggagtagaaatgagaatacgtgcaaaatcaagcctcgccttat |
5961017 |
T |
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| Q |
310 |
ccaccgtacaatcatcggcccaaatgaatcttccatacttcgaaacacataatatgaaaaacaattcattccatgcatgaacgggagtactatacacatg |
409 |
Q |
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| T |
5961018 |
ccaccgtacaattgtcgacccaaataaatctgctacattctgaaacacataatttgaaaaacgattcgttccatgcatgaatgggagtaccatacacaag |
5961117 |
T |
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| Q |
410 |
gatcca |
415 |
Q |
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| T |
5961118 |
gatcca |
5961123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 307 - 399
Target Start/End: Original strand, 19661684 - 19661776
Alignment:
| Q |
307 |
tgtccaccgtacaatcatcggcccaaatgaatcttccatacttcgaaacacataatatgaaaaacaattcattccatgcatgaacgggagtac |
399 |
Q |
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| T |
19661684 |
tgtccaccgtacaatcatccgaacggatatatcttccacaccccgaaacacaaattttgaaaaacaattcattccatgcatgcacaggagtac |
19661776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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