View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3857_low_11 (Length: 497)
Name: NF3857_low_11
Description: NF3857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3857_low_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 16 - 486
Target Start/End: Original strand, 40606644 - 40607114
Alignment:
| Q |
16 |
caagttcaactcagctcgactcgttttccaaccatttccaactgtttgtgtactattagcaccataaatctttctgagagtcattaaatatgaattatgc |
115 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40606644 |
caagttcaactcagctcgacccgttttccaaccatttccaactgtttgtgtactattagcaccataaatctttctgagagtcattaaatatgaattatgc |
40606743 |
T |
|
| Q |
116 |
agcatcagggtcgcaggataggacacgaaattaagacatatcgggtaaaaagaatcacgtgctgggaagcgtttgagcaaattacattttattgtgtctc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40606744 |
agcatcagggtcgcaggataggacacgaaattaagacatatcgggtaaaaagaatcacgtgctgggaagcgtttgagcaaattacattttattgtgtctc |
40606843 |
T |
|
| Q |
216 |
ataattgttgtgtcttaaatcagcaaggtttctaaacctggagccctctaaattaatgccgagagtctattgcaaaggcccacagcagggctcatcatta |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40606844 |
ataattgttgtgtcttaaatcagcaaggtttctaaacctggagccctctaaattaatgccgagagtctattgcaaaggcccacagcagggctcatcatta |
40606943 |
T |
|
| Q |
316 |
gccatgtggtaagaagttctggtactannnnnnnaaagaagtaaaaacaagtttattagaatgaataacgacgatagtccaacacattttattaggtgac |
415 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40606944 |
gccatgtggtatgaagttctggtactatttttttaaagaagtaaaaacaagtttattagaatgaataacgacgatagtccaacacattttattaggtgac |
40607043 |
T |
|
| Q |
416 |
aaatttaaattcgtcaaaaagatggtagagagtacaattgatgtttacagaagagttggtgaatgatgatg |
486 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40607044 |
aaatttaaattcgtcaaaaagatggtagagagtacaattgatgtttacagaagagttggtgaatgatgatg |
40607114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University