View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3857_low_13 (Length: 490)
Name: NF3857_low_13
Description: NF3857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3857_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-159; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 18 - 364
Target Start/End: Complemental strand, 32738495 - 32738155
Alignment:
| Q |
18 |
tgttctactacaaacatgcaaaatttaatatattgggtgaaggaaattcatgaattatgcgaattatagttcatttttattcaaacataaaaatttatta |
117 |
Q |
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| T |
32738495 |
tgttctactgcaaacatgcaaaatttaatatattgggtgaaggaaattcatgaattatgcgaatta--gttcatttttattcaaacataataat--atta |
32738400 |
T |
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| Q |
118 |
aggtaacttgtgtactattatgggtgccgtggtttatggtcaaacttcacttcataattgatttcagggcattaattattttgctatgtattcattcaaa |
217 |
Q |
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| T |
32738399 |
aggtaacttgtgtacgattatgggtgccgtggtttatggtcaaacttcacttcataattgatt-cagggcattaattattttgctatgtattcattcaaa |
32738301 |
T |
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| Q |
218 |
cctttgaattttgaaacatcatgtcaatctgaagcgacttttgatactttgacacacgccaggacttgaaaaagagcaccacttttcataattatgtgtc |
317 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32738300 |
cctttgaattttgaaacatcatatcaatctgaagcgacttttgatactt-gacacacgccaggacttgaaaaagagcaccacttttgataattatgtgtc |
32738202 |
T |
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| Q |
318 |
taatttctcaggtgacatatttcatttctcaatagaatcaattaatc |
364 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32738201 |
taatttctcaggtgacatatttcgtttctcaatagaatcaattaatc |
32738155 |
T |
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