View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3857_low_15 (Length: 462)
Name: NF3857_low_15
Description: NF3857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3857_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 18 - 452
Target Start/End: Complemental strand, 27008101 - 27007667
Alignment:
| Q |
18 |
aaagcccaaatggtccaattttcactttagccatacaagtatttttgaagtatcatacaaacataaaaaagattaaactatgaaccttattctatgagta |
117 |
Q |
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| T |
27008101 |
aaagcccaaatggtccaattttcactttagccatacaagtatttttgaagtatcatacaaacataaaaaagattaaactatgaaccttattctatgagta |
27008002 |
T |
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| Q |
118 |
ttgttaaattaaactcttgatcaagatcacacaaaggaaatacagaacatacaacaacctagtgatgcaacaatgattctgaaattagcctcaaatttga |
217 |
Q |
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| T |
27008001 |
ttgttaaattaaactcttgatcaagttcacacaaaggaaatacagaacatacaacaacctagtgatgcaacaatgattctgaaattagcctcaaatttga |
27007902 |
T |
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| Q |
218 |
tcagtaagagatgattgttgctcctcttgcactacttcctgttggagttgctgaggttgttctccttgccagttccaaacaatgtccttaagtgctggtc |
317 |
Q |
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| T |
27007901 |
tcagtaagagatgattgttgctcctcttgcactacttcctgttggagttgctgaggttgttctccttgccagttccacacaatgtccttaagtgctggtc |
27007802 |
T |
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| Q |
318 |
taatctcctgttgcaaaagcttctcatactccactgtatcaccatcagactttttaagttccacaagatggaagtgaggagtaatctcgaaaatctctgc |
417 |
Q |
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| T |
27007801 |
taatctcctgttgcaaaagcttctcatactccactgtatcaccatcagactttttaagttccacaagatggaagtgaggagtaatctcgaaaatctctgc |
27007702 |
T |
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| Q |
418 |
atcaatgttcagaatccctttcctaccttcctttg |
452 |
Q |
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| T |
27007701 |
atcaatgttcagaatccctttcctaccttcctttg |
27007667 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 265 - 309
Target Start/End: Original strand, 9994187 - 9994231
Alignment:
| Q |
265 |
ttgctgaggttgttctccttgccagttccaaacaatgtccttaag |
309 |
Q |
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| T |
9994187 |
ttgctgtggttgttctccttgccaattccaaacaatgtccttaag |
9994231 |
T |
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