View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3857_low_16 (Length: 461)
Name: NF3857_low_16
Description: NF3857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3857_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 19 - 359
Target Start/End: Complemental strand, 44695500 - 44695167
Alignment:
| Q |
19 |
aataataacacggttgaaagaaagaaataaatatgtgttatattgcaagataataggatatccccttttaattttccacacctgaataacaaaatatctc |
118 |
Q |
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| T |
44695500 |
aataataacacggttgaaagaaa----taaatatgtga---attgcaagataataggatatccccttttaattttccacacctgaataacaaaatatctc |
44695408 |
T |
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| Q |
119 |
gtagaactatgattgtcatcgcatatgaaccattcacagggtgaagaacttgttgagtttaaatcatcttcaaaagattgttttacttcctcatttgcgg |
218 |
Q |
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| T |
44695407 |
gtagaactacgatcgtcatcgcatatgaaccattcacagggtgaagaacttgttgagtttaaatcatctgcaaaagattgttttacttcctcatttgcgg |
44695308 |
T |
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| Q |
219 |
caacaactgctgtcattgaattggtagttgctatcaaacagccaacatcagtgtccatcatgttcagagtatcaacgctcccgttgcttccttcaactga |
318 |
Q |
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| T |
44695307 |
caacaactgctgtcattgaattggtagttgccatcaaacagccaacatcagtgtccatcatgttcacagtatcaacgctcccgttgcttccttcaactga |
44695208 |
T |
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| Q |
319 |
accttcaaccactgcaatctcacaagcattagatgcacttg |
359 |
Q |
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| T |
44695207 |
accttcaaccactgcaatctcacaagcattagatgcacttg |
44695167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 98 - 256
Target Start/End: Original strand, 39146439 - 39146597
Alignment:
| Q |
98 |
acctgaataacaaaatatctcgtagaactatgattgtcatcgcatatgaaccattcacagggtgaagaacttgttgagtttaaatcatcttcaaaagatt |
197 |
Q |
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| T |
39146439 |
acctgaataacaaaaaatcttgtaccactctggttatcatcacagatgaaccattcacaaggtgatgaatgagttgagtttagatcatctgcaacagcct |
39146538 |
T |
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| Q |
198 |
gttttacttcctcatttgcggcaacaactgctgtcattgaattggtagttgctatcaaa |
256 |
Q |
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| T |
39146539 |
gttttacttcctcctttgccgcaaccactgctgtcactgaatcagtagtcgccatcaaa |
39146597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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