View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3857_low_17 (Length: 458)
Name: NF3857_low_17
Description: NF3857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3857_low_17 |
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| [»] scaffold0202 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 31042920 - 31042595
Alignment:
| Q |
1 |
tattatatggtccaagtctttaa---cttctgtaacttgcacaaatagagagacggtggcgtgtgaggaagaggatgaaacgacgacaaagttacaaacg |
97 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||| ||||| |||| |
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| T |
31042920 |
tattatatggtccaagtctttaattacttctgtaacttgcacaaatagagagacggtggcgtgcgaggaagaggatgcaacgactacaaggttacgaacg |
31042821 |
T |
|
| Q |
98 |
cagtagcagccagatgcagcgacttcaagggatatcaacggcctatgtgttgtgcgtgcaaggtggaggcggcgacaaactatgttgcaaaagccgatga |
197 |
Q |
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| T |
31042820 |
ctatagaagccagatgcagcaacttcaaaggatatcaacggcctatgtgttgtgcgtgcaaggtggaggcgtcgacgaactatgtcgcaaaagccgatga |
31042721 |
T |
|
| Q |
198 |
tcctcttaatctattcaacaaatatcaaagacctagcagaaatagtgaaactatcaccactcatatagttgaatagaataaataagataatcgagaacta |
297 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
31042720 |
tcctcttaatctatttcacaaatatcaaagacctagcagaaatagtgaaactatcaccactcatatagttgaatagaataaataagacaattgagaacta |
31042621 |
T |
|
| Q |
298 |
caagtagtcagcacca-tagagtaaa |
322 |
Q |
| |
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|||||||||||||||| ||||||||| |
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| T |
31042620 |
caagtagtcagcaccattagagtaaa |
31042595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 177 - 284
Target Start/End: Complemental strand, 31108032 - 31107925
Alignment:
| Q |
177 |
ctatgttgcaaaagccgatgatcctcttaatctattcaacaaatatcaaagacctagcagaaatagtgaaactatcaccactcatatagttgaatagaat |
276 |
Q |
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|||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
31108032 |
ctatgttgcaaaagccgatgattctcttaatgtattcaacaaacatcaaagacctagcagaaatcatgaaactatcaccactcatatagttgaagagaat |
31107933 |
T |
|
| Q |
277 |
aaataaga |
284 |
Q |
| |
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|||||||| |
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| T |
31107932 |
aaataaga |
31107925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 219 - 352
Target Start/End: Complemental strand, 31106345 - 31106207
Alignment:
| Q |
219 |
atatcaaagacctagcagaaatagtgaaactatcaccactcatatagttgaatagaataaataagataatcgagaactaca----agtagtcagcacca- |
313 |
Q |
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||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||| |||||||||| || || ||||||| ||| |||||||||| |
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| T |
31106345 |
atatcaaagacctagcagaaatactgaaactatcagcactcatatagttgaagagactaaataagatgatggaaaactacaagctagttgtcagcaccat |
31106246 |
T |
|
| Q |
314 |
tagagtaaattattttgaaccattcaatatcaacattat |
352 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
31106245 |
tagagtaaattattttgaaccattcaatatcaacattat |
31106207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 31106473 - 31106339
Alignment:
| Q |
1 |
tattatatggtccaagtctttaacttctgtaacttgcacaaatagagagacggtggcgtgtgaggaagaggatgaaacgacgacaaagttacaaacgcag |
100 |
Q |
| |
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|||||||||||||||||||| ||||| || ||||||||||||||||||||||||| || |||||| | ||| ||||| ||||| |||| ||||||| |
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| T |
31106473 |
tattatatggtccaagtcttcaacttacgtgacttgcacaaatagagagacggtggtgttcaaggaagcgaatgcaacgatgacaaggttatgaacgcag |
31106374 |
T |
|
| Q |
101 |
tagcagccagatgcagcgacttcaagggatatcaa |
135 |
Q |
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|||| || || |||| |||||||||||||||||| |
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| T |
31106373 |
gagcatcccgaagcagtgacttcaagggatatcaa |
31106339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 143
Target Start/End: Complemental strand, 31050460 - 31050321
Alignment:
| Q |
4 |
tatatggtccaagtctttaacttctgtaacttgcacaaatagagagacggtggcgtgtgaggaagaggatgaaacgacgacaaagttacaaacgcagtag |
103 |
Q |
| |
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||||||||||||||||| ||||| |||||| ||||||||||||||| || | ||| ||| ||||||| | ||||||| |||||||| ||||||| |
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| T |
31050460 |
tatatggtccaagtcttcaacttgagtaactagcacaaatagagagatggcgtcgtacgagttggaggatgcagcgacgacggggttacaaatgcagtag |
31050361 |
T |
|
| Q |
104 |
cagccagatgcagcgacttcaagggatatcaacggcctat |
143 |
Q |
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|||| ||| |||||||| || ||||||| |||| ||||| |
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| T |
31050360 |
cagctagaagcagcgaccgcatgggatattaacgccctat |
31050321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 209 - 269
Target Start/End: Original strand, 31095074 - 31095134
Alignment:
| Q |
209 |
tattcaacaaatatcaaagacctagcagaaatagtgaaactatcaccactcatatagttga |
269 |
Q |
| |
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||||||||||| |||||||||||||||| ||||| | |||| |||||||| |||||||||| |
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| T |
31095074 |
tattcaacaaacatcaaagacctagcaggaatagaggaactgtcaccactgatatagttga |
31095134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 31094858 - 31094907
Alignment:
| Q |
1 |
tattatatggtccaagtctttaacttctgtaacttgcacaaatagagaga |
50 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||| ||||||||||||||| |
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| T |
31094858 |
tattatatggtccaagtcttcaacttaagtaactagcacaaatagagaga |
31094907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 3574 - 3693
Alignment:
| Q |
1 |
tattatatggtccaagtctttaacttctgtaacttgcacaaatagagagacggtggcgtgtgaggaagaggatgaaacgacgacaaagttacaaacgcag |
100 |
Q |
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||||||| |||||||||||| |||||| |||||| |||||||| |||||| |||| ||| |||||||||||||| | ||||||| |||||||| || | |
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| T |
3574 |
tattataaggtccaagtcttcaacttcagtaactagcacaaatggagagatggtgtcgtatgaggaagaggatgcagcgacgacggggttacaaatgcgg |
3673 |
T |
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| Q |
101 |
tagcagccagatgcagcgac |
120 |
Q |
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||||||||||| |||||||| |
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| T |
3674 |
tagcagccagaagcagcgac |
3693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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