View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3857_low_18 (Length: 442)
Name: NF3857_low_18
Description: NF3857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3857_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Complemental strand, 981975 - 981540
Alignment:
| Q |
1 |
ttattattgggtaaaattagttttctagggtttgtcagaaaaattgaaggttaagttggagatcaatcaagataatattgtagtggaaacaaatcaattg |
100 |
Q |
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| T |
981975 |
ttattattggataaaattagttttccaggatttgccagaaaaattgaaggttaagttggagatcaatcaagataatattgtagtgggaacaaatcaatcg |
981876 |
T |
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| Q |
101 |
ttgttggtgactagatttcttagcatggttgctaagaggaaagattattgtccgatagatgttgaagaatggtctcaaatgcccaagtcaataaaagaca |
200 |
Q |
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| T |
981875 |
ttgttggtgactagatttcttggcatggttgctaagaggaaagattattgtccgatagatgttgaagaatggtctcaaatgcccaggtcaataaaagaca |
981776 |
T |
|
| Q |
201 |
atttatgagcacttattaaggtaacttctataattttgtgccgtgtagatagtagaatccttcatgcatcagtttttctctaggctgctatcatttggtt |
300 |
Q |
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| T |
981775 |
acttatgggcacttattaaggtaacttctataattttgtgccgtgtatatagtagaatccttcatgcatcagttttcctctaggctgctatcatttggtt |
981676 |
T |
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| Q |
301 |
catttgttttccaagccattcaatatgaaatcaatttgtgtctcgcaaatgataagttatttctgattatttattgctcattcggtgcatcttttgtcat |
400 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||| |||||||||||| |
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| T |
981675 |
catttgttttccaagccatttaatatgaaatcaatttgtgtctcgcaaatgatgagttatttctgattgtttattgttcattcggtgtatcttttgtcat |
981576 |
T |
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| Q |
401 |
gcttccagttcaatcaacattgcattttctattgtt |
436 |
Q |
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| T |
981575 |
gcttccagttcaatcagcattgcattttctattgtt |
981540 |
T |
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