View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3857_low_2 (Length: 759)
Name: NF3857_low_2
Description: NF3857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3857_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 494; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 76 - 726
Target Start/End: Original strand, 25550741 - 25551386
Alignment:
| Q |
76 |
gtactagttaacaatgcaactaatagagattaggattcactcatgttagaaaaaatttgaggaaataatgtgtaagatctagacctttaatatataaaat |
175 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25550741 |
gtactagttaacaatccaactaatagagattaggattcactcatgttagaaaaaacttgaggaaataatgtgtaagatctagacctttaatatataaaat |
25550840 |
T |
|
| Q |
176 |
gagagattttttggatttnnnnnnnnntggagaaaagtttattaatggttaaggactatcaaggcttactatatgtgtttcacttgtgtcaacaaatagt |
275 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
25550841 |
gagagattttttggatttaaaaaaaa-tggagaaaagtttattaatggttaaggactatcaaggcttactatttgtgtttcacttgtgtcaacaaatagt |
25550939 |
T |
|
| Q |
276 |
taatcaaccatatgatgtttaatccttgatgccaatacattctagaatccttctggtgtgtttccaaatgttcaaaactacttttgtaccaatactaaat |
375 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25550940 |
taatcaaccatatgatgtttaatcattgatgccaatacattctagaatccttctggtgtgtttccaaatgttcaaaactacttttgtaccaatactaaat |
25551039 |
T |
|
| Q |
376 |
tcgtgtttcacattatgtcaacatactagagtagagttattcatcgaaaaatagtgtgtatggtatctgacgcattgtatactcagcaaacaatatatat |
475 |
Q |
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||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
25551040 |
tcgtgtttcacattatgtcaacatactagagagtaattattcatcgaaaaatagtgtgtatggtatctgacgcattgtatactcagcagacaatatatat |
25551139 |
T |
|
| Q |
476 |
ttaatggtccttgcnnnnnnnnnnaaagacatacgtgattagtatatgggtcttactaagggaactttgttaaatgttaaggatttaaaaatggaaataa |
575 |
Q |
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| T |
25551140 |
ttaatggtccttgctttttttttt-aagacatacgtgattagtatatgggtcttactaagggaactttgttaaatgttaa-gatttaaaaatggaaataa |
25551237 |
T |
|
| Q |
576 |
tttataattttgatgtaaaaaatatagtttgttttgtatgttttaatatgttgaatatgcaaatcccaacataaaataaattaagggcatttatttgtat |
675 |
Q |
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|| |||||||||||||||||| |||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
25551238 |
ttgataattttgatgtaaaaa--atagttcattttttatattttaatatgttgaatatgcaaatcccaacataaaataaattaagggcacttatttgtat |
25551335 |
T |
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| Q |
676 |
tctccttaatattcacgagatgatcgtttttctagtgacaaacatactttg |
726 |
Q |
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|||||||| |||||| ||||||||||||||||||||||||||||||||||| |
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| T |
25551336 |
tctccttagtattcaggagatgatcgtttttctagtgacaaacatactttg |
25551386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 25550619 - 25550700
Alignment:
| Q |
19 |
gaagtctataactcaacggagaggatatagacttcaatacttggttgatcatagggagtactagttaacaatgcaactaata |
100 |
Q |
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| T |
25550619 |
gaagtctataactcaacggagaggatatagacttcaatacttggttgatcatagggagtactagttaacaatgcaactaata |
25550700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 552 - 597
Target Start/End: Original strand, 35685464 - 35685509
Alignment:
| Q |
552 |
ttaaggatttaaaaatggaaataatttataattttgatgtaaaaaa |
597 |
Q |
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||||||||||||| ||| ||||||||||||| ||| |||||||||| |
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| T |
35685464 |
ttaaggatttaaatatgaaaataatttataagttttatgtaaaaaa |
35685509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 551 - 592
Target Start/End: Original strand, 41284593 - 41284634
Alignment:
| Q |
551 |
gttaaggatttaaaaatggaaataatttataattttgatgta |
592 |
Q |
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||||||||||||||||| |||||||||||||| ||| ||||| |
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| T |
41284593 |
gttaaggatttaaaaatagaaataatttataaattttatgta |
41284634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 250 - 330
Target Start/End: Complemental strand, 48512578 - 48512503
Alignment:
| Q |
250 |
gtgtttcacttgtgtcaacaaatagttaatcaaccatatgatgtttaatccttgatgccaatacattctagaatccttctg |
330 |
Q |
| |
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||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||| |||||||||||||| |||| |
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| T |
48512578 |
gtgtttcacttgtgtcaacaaatggttaatc-----tatgatgtttaatccttgataccaagacattctagaatccatctg |
48512503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 551 - 600
Target Start/End: Original strand, 26683635 - 26683684
Alignment:
| Q |
551 |
gttaaggatttaaaaatggaaataatttataattttgatgtaaaaaatat |
600 |
Q |
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| T |
26683635 |
gttaaggatttaaaaatggaaataatttataaattttatgtagaaaatat |
26683684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 552 - 632
Target Start/End: Original strand, 48520053 - 48520128
Alignment:
| Q |
552 |
ttaaggatttaaaaatggaaataatttataattttgatgtaaaaaatatagtttgttttgtatgttttaatatgttgaata |
632 |
Q |
| |
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||||||||||||||||| |||||||| ||||| || ||||||||||| ||||||| ||||||||||| ||||||||| |
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| T |
48520053 |
ttaaggatttaaaaatgaaaataattaataatctt-atgtaaaaaat----gttgttttttatgttttaatttgttgaata |
48520128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 551 - 597
Target Start/End: Complemental strand, 42350499 - 42350453
Alignment:
| Q |
551 |
gttaaggatttaaaaatggaaataatttataattttgatgtaaaaaa |
597 |
Q |
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|||||||||||||||||||||||||||||||| ||| ||||| |||| |
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| T |
42350499 |
gttaaggatttaaaaatggaaataatttataaattttatgtagaaaa |
42350453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 550 - 598
Target Start/End: Complemental strand, 34187059 - 34187011
Alignment:
| Q |
550 |
tgttaaggatttaaaaatggaaataatttataattttgatgtaaaaaat |
598 |
Q |
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|
|||||| |||||||||||||||| |||| |||||||| ||||||||||| |
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| T |
34187059 |
tgttaaagatttaaaaatggaaacaattgataattttcatgtaaaaaat |
34187011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 552 - 597
Target Start/End: Complemental strand, 5000448 - 5000403
Alignment:
| Q |
552 |
ttaaggatttaaaaatggaaataatttataattttgatgtaaaaaa |
597 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||| |||||||||| |
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| T |
5000448 |
ttaaggatttaaaaatagaaataatttataagttttatgtaaaaaa |
5000403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 551 - 582
Target Start/End: Complemental strand, 18730432 - 18730401
Alignment:
| Q |
551 |
gttaaggatttaaaaatggaaataatttataa |
582 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
18730432 |
gttaaggatttaaaaatggaaataatttataa |
18730401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 552 - 597
Target Start/End: Complemental strand, 6662169 - 6662124
Alignment:
| Q |
552 |
ttaaggatttaaaaatggaaataatttataattttgatgtaaaaaa |
597 |
Q |
| |
|
||||||||| |||||| |||||||||||||| ||||||||| |||| |
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|
| T |
6662169 |
ttaaggattcaaaaattgaaataatttataaatttgatgtagaaaa |
6662124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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