View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3857_low_20 (Length: 418)
Name: NF3857_low_20
Description: NF3857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3857_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Original strand, 33994560 - 33994968
Alignment:
| Q |
1 |
aaatatagcgtctaaataatagacatattgaatttaacgcacttataaatttgacgttaactactatttattttattgatttttgtatctggcaaaaaag |
100 |
Q |
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| T |
33994560 |
aaatatagtgtctaaataatagacatattgaatttaacgcacttataaatttgacgttaactactatttattttattgatttttgtatctggcaaaaaag |
33994659 |
T |
|
| Q |
101 |
tccagacaataatatataagagcatcatgctcaatataagtgagaatttcatcacatatatcaatgcacacattttacaatttactttatcttttttgat |
200 |
Q |
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| T |
33994660 |
tccagacaataatatataagagcatcatgctcaatataagtgagaatttcatcacatatatcaatgcacacattttacaatttactttatcttttttgat |
33994759 |
T |
|
| Q |
201 |
ataatacctatatccacataaattaaagcatatatctctgatagacttaaaccataatttaaaccacacaatttactttatagtctaattcctcaataga |
300 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33994760 |
ataatacctacatccacataaattaaagcatatatctctgatagacttaaaccataatttaaaccacacaatttactttatagtctaattcctcaataga |
33994859 |
T |
|
| Q |
301 |
aaagcctttcatcatgcagcaaaattgccaaagattattgggcttctcatgctcaccgtgatttatttcttttcatcccnnnnnnncacttttgctttaa |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
33994860 |
aaagcctttcatcatgcagcaaaattgccaaagattattgggcttctcatgctcaccgtgatttatttcttttcatcccttttcttcacttttgctttaa |
33994959 |
T |
|
| Q |
401 |
catcctatg |
409 |
Q |
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| T |
33994960 |
catcctatg |
33994968 |
T |
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