View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3857_low_21 (Length: 412)

Name: NF3857_low_21
Description: NF3857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3857_low_21
NF3857_low_21
[»] chr3 (10 HSPs)
chr3 (15-185)||(43102079-43102249)
chr3 (15-84)||(36626928-36626997)
chr3 (15-90)||(10987508-10987583)
chr3 (15-84)||(36627892-36627959)
chr3 (15-90)||(2124214-2124289)
chr3 (15-90)||(41387289-41387364)
chr3 (69-114)||(7820672-7820717)
chr3 (15-47)||(41386315-41386347)
chr3 (370-406)||(43102434-43102470)
chr3 (15-51)||(51824311-51824347)
[»] chr2 (7 HSPs)
chr2 (57-185)||(42028448-42028577)
chr2 (15-185)||(34039438-34039594)
chr2 (15-81)||(2581968-2582034)
chr2 (24-90)||(15650635-15650701)
chr2 (15-66)||(42028842-42028893)
chr2 (370-406)||(34039775-34039811)
chr2 (370-406)||(42028248-42028284)
[»] scaffold2127 (1 HSPs)
scaffold2127 (17-83)||(378-444)
[»] chr1 (6 HSPs)
chr1 (17-83)||(47136550-47136616)
chr1 (15-74)||(16217625-16217684)
chr1 (15-51)||(3978229-3978265)
chr1 (15-67)||(16218357-16218409)
chr1 (15-51)||(25786153-25786189)
chr1 (15-51)||(52181200-52181236)
[»] chr8 (6 HSPs)
chr8 (17-90)||(31624093-31624166)
chr8 (15-51)||(38590005-38590041)
chr8 (18-90)||(43275938-43276010)
chr8 (15-90)||(41867771-41867846)
chr8 (15-51)||(27750516-27750552)
chr8 (15-51)||(43277816-43277852)
[»] chr4 (9 HSPs)
chr4 (17-90)||(5688493-5688566)
chr4 (15-90)||(44126783-44126858)
chr4 (15-90)||(1273289-1273364)
chr4 (15-90)||(37559183-37559258)
chr4 (15-65)||(33377245-33377295)
chr4 (18-90)||(55952995-55953067)
chr4 (15-51)||(55953747-55953783)
chr4 (15-48)||(37560198-37560231)
chr4 (15-47)||(26788707-26788739)
[»] chr7 (8 HSPs)
chr7 (17-90)||(46673676-46673749)
chr7 (18-82)||(22746184-22746248)
chr7 (15-90)||(22061651-22061726)
chr7 (15-89)||(7146964-7147038)
chr7 (29-82)||(7147925-7147978)
chr7 (15-90)||(22060648-22060724)
chr7 (18-90)||(22744934-22745006)
chr7 (15-114)||(1970993-1971092)
[»] chr6 (3 HSPs)
chr6 (18-82)||(8412180-8412244)
chr6 (18-90)||(8411274-8411346)
chr6 (67-111)||(9101615-9101659)
[»] chr5 (2 HSPs)
chr5 (22-84)||(26404072-26404134)
chr5 (15-90)||(19569482-19569557)
[»] scaffold0369 (1 HSPs)
scaffold0369 (18-107)||(13092-13181)


Alignment Details
Target: chr3 (Bit Score: 147; Significance: 2e-77; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 15 - 185
Target Start/End: Original strand, 43102079 - 43102249
Alignment:
Q  15 aaaaagcacacatggcataccgtggactcacaacataagctaatttttattgtcatcttcttccctcttcttcttctaacttcatacccaaaacaaaaaa 114  Q
    ||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  43102079 aaaaagcacacatagcataccgtggactcacaacatacgataatttttattgtcatcttcttccctctttttcttctaacttcatacccaaaacaaaaaa 43102178  T
Q  115 caatagttcagcaactttctttctttatgaatctagttccataaatagaacaacaacaatttcttcatccc 185  Q
    |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  43102179 caattgttcagcaactttctttctttatgaatctagttccataaacagaacaacaacaatttcttcatccc 43102249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 36626928 - 36626997
Alignment:
Q  15 aaaaagcacacatggcataccgtggactcacaacataagctaatttttattgtcatcttcttccctcttc 84  Q
    |||||||||| || ||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||    
T  36626928 aaaaagcacagatagcataccgtggactcacaacatatgataacttttattgtcatcttcttccctcttc 36626997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 15 - 90
Target Start/End: Complemental strand, 10987583 - 10987508
Alignment:
Q  15 aaaaagcacacatggcataccgtggactcacaacataagctaatttttattgtcatcttcttccctcttcttcttc 90  Q
    |||||||||||||||||||| |||||||||||||||| | ||| || ||| ||||||||||||||||||| |||||    
T  10987583 aaaaagcacacatggcatacagtggactcacaacataggataacttctatggtcatcttcttccctcttcatcttc 10987508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 36627959 - 36627892
Alignment:
Q  15 aaaaagcacacatggcataccgtggactcacaacataagctaatttttattgtcatcttcttccctcttc 84  Q
    ||||||||||||| ||||||||||||||||||||||||  ||| || ||||||||||||||||| |||||    
T  36627959 aaaaagcacacatagcataccgtggactcacaacataa--taacttctattgtcatcttcttccttcttc 36627892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 2124214 - 2124289
Alignment:
Q  15 aaaaagcacacatggcataccgtggactcacaacataagctaatttttattgtcatcttcttccctcttcttcttc 90  Q
    |||||||||||||| |||| |||||| |||||||||| | ||| |  |||| |||||||||||||||||| |||||    
T  2124214 aaaaagcacacatgacatatcgtggattcacaacatatgataactcctattttcatcttcttccctcttcatcttc 2124289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 90
Target Start/End: Complemental strand, 41387364 - 41387289
Alignment:
Q  15 aaaaagcacacatggcataccgtggactcacaacataagctaatttttattgtcatcttcttccctcttcttcttc 90  Q
    ||||||||||| ||||||||||||||||||||||||| | ||| ||  ||  |||||||||||| ||||| |||||    
T  41387364 aaaaagcacacttggcataccgtggactcacaacatatgataacttccatcttcatcttcttccatcttcatcttc 41387289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 114
Target Start/End: Original strand, 7820672 - 7820717
Alignment:
Q  69 atcttcttccctcttcttcttctaacttcatacccaaaacaaaaaa 114  Q
    |||||||||||||||| ||| | |||||||||||||||| ||||||    
T  7820672 atcttcttccctcttcatctcccaacttcatacccaaaaaaaaaaa 7820717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 41386315 - 41386347
Alignment:
Q  15 aaaaagcacacatggcataccgtggactcacaa 47  Q
    ||||| |||||||||||||||||||||||||||    
T  41386315 aaaaaacacacatggcataccgtggactcacaa 41386347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Original strand, 43102434 - 43102470
Alignment:
Q  370 ctccatcttcatcttcttcttatatatattcttctca 406  Q
    |||||||||||||||||||| |||||| |||||||||    
T  43102434 ctccatcttcatcttcttctgatatattttcttctca 43102470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 51824311 - 51824347
Alignment:
Q  15 aaaaagcacacatggcataccgtggactcacaacata 51  Q
    ||||||||||| |||||||||||| ||||||||||||    
T  51824311 aaaaagcacacgtggcataccgtgaactcacaacata 51824347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 2e-50; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 57 - 185
Target Start/End: Complemental strand, 42028577 - 42028448
Alignment:
Q  57 atttttattgtcatcttcttccctcttcttcttctaacttcatacccaaaacaaaaaacaatagttcagcaactttctttctttatgaatctagttccat 156  Q
    |||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  42028577 atttttattgtcatcttcttccctcttcatcatccaacttcatacccaaaacaaaaaacaatagttcaacaactttctttctttatgaatctagttccat 42028478  T
Q  157 aaatagaacaac-aacaatttcttcatccc 185  Q
    ||| |||||||| |||||||||||||||||    
T  42028477 aaacagaacaactaacaatttcttcatccc 42028448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 15 - 185
Target Start/End: Original strand, 34039438 - 34039594
Alignment:
Q  15 aaaaagcacacatggcataccgtggactcacaacataagctaatttttattgtcatcttcttccctcttcttcttctaacttcatacccaaaacaaaaaa 114  Q
    ||||| |||||||| |||||||| ||||||||||||| | ||||||||||||||||||||||||             |||||||||||||||||||||||    
T  34039438 aaaaaacacacatgacataccgtagactcacaacatacgataatttttattgtcatcttcttcc-------------aacttcatacccaaaacaaaaaa 34039524  T
Q  115 caatagttcagcaactttctttctttatgaatctagttccataaatagaacaacaacaatttcttcatccc 185  Q
    |||||||||| |||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  34039525 caatagttcaacaacgt-ctttctttatgaatctagttccataaacagaacaacaacaatttcttcatccc 34039594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 81
Target Start/End: Original strand, 2581968 - 2582034
Alignment:
Q  15 aaaaagcacacatggcataccgtggactcacaacataagctaatttttattgtcatcttcttccctc 81  Q
    ||||||||||||||| ||||||||||||||||||||| | ||| || ||||||||||||||||||||    
T  2581968 aaaaagcacacatgggataccgtggactcacaacatatgataaattctattgtcatcttcttccctc 2582034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 24 - 90
Target Start/End: Original strand, 15650635 - 15650701
Alignment:
Q  24 acatggcataccgtggactcacaacataagctaatttttattgtcatcttcttccctcttcttcttc 90  Q
    |||| |||||| |||||||||||||||| | |||||||||||||||||||||||||||||| |||||    
T  15650635 acatagcatactgtggactcacaacatatgataatttttattgtcatcttcttccctcttcatcttc 15650701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 42028893 - 42028842
Alignment:
Q  15 aaaaagcacacatggcataccgtggactcacaacataagctaatttttattg 66  Q
    ||||||||||||||||||||| ||||||||||||||| | ||||||||||||    
T  42028893 aaaaagcacacatggcataccctggactcacaacatacgataatttttattg 42028842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Original strand, 34039775 - 34039811
Alignment:
Q  370 ctccatcttcatcttcttcttatatatattcttctca 406  Q
    |||||||||||||||||||| |||||| |||||||||    
T  34039775 ctccatcttcatcttcttctcatatattttcttctca 34039811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Complemental strand, 42028284 - 42028248
Alignment:
Q  370 ctccatcttcatcttcttcttatatatattcttctca 406  Q
    |||||||||||||||||||| |||||| |||||||||    
T  42028284 ctccatcttcatcttcttctcatatattttcttctca 42028248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2127 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold2127
Description:

Target: scaffold2127; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 444 - 378
Alignment:
Q  17 aaagcacacatggcataccgtggactcacaacataagctaatttttattgtcatcttcttccctctt 83  Q
    ||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||    
T  444 aaagcacacatggcataccgtggactcacaacatatgataacttttattgtcatcttcttccctctt 378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 47136616 - 47136550
Alignment:
Q  17 aaagcacacatggcataccgtggactcacaacataagctaatttttattgtcatcttcttccctctt 83  Q
    ||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||    
T  47136616 aaagcacacatggcataccgtggactcacaacatatgataacttttattgtcatcttcttccctctt 47136550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 74
Target Start/End: Original strand, 16217625 - 16217684
Alignment:
Q  15 aaaaagcacacatggcataccgtggactcacaacataagctaatttttattgtcatcttc 74  Q
    |||||||||||||||||||||||||||||||||| ||   ||| || |||||||||||||    
T  16217625 aaaaagcacacatggcataccgtggactcacaacgtaccataacttctattgtcatcttc 16217684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 3978229 - 3978265
Alignment:
Q  15 aaaaagcacacatggcataccgtggactcacaacata 51  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  3978229 aaaaagaacacatgccataccgtggactcacaacata 3978265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 16218409 - 16218357
Alignment:
Q  15 aaaaagcacacatggcataccgtggactcacaacataagctaatttttattgt 67  Q
    ||||||||||| || |||||||| ||||||||||||| | ||||| |||||||    
T  16218409 aaaaagcacacgtgacataccgtagactcacaacatatgataattcttattgt 16218357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 25786153 - 25786189
Alignment:
Q  15 aaaaagcacacatggcataccgtggactcacaacata 51  Q
    |||||||||||||| |||||| |||||||||||||||    
T  25786153 aaaaagcacacatgacataccatggactcacaacata 25786189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 52181236 - 52181200
Alignment:
Q  15 aaaaagcacacatggcataccgtggactcacaacata 51  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  52181236 aaaaagcacacatgacataccgtgaactcacaacata 52181200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 31624093 - 31624166
Alignment:
Q  17 aaagcacacatggcataccgtggactcacaacataagctaatttttattgtcatcttcttccctcttcttcttc 90  Q
    |||||||||||||||||| || |||| |||||||| | |||||||||||||||||||||||||||||| |||||    
T  31624093 aaagcacacatggcatactgtagacttacaacatatgataatttttattgtcatcttcttccctcttcatcttc 31624166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 38590005 - 38590041
Alignment:
Q  15 aaaaagcacacatggcataccgtggactcacaacata 51  Q
    |||||||||||||||||||||||||||||||||||||    
T  38590005 aaaaagcacacatggcataccgtggactcacaacata 38590041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 43275938 - 43276010
Alignment:
Q  18 aagcacacatggcataccgtggactcacaacataagctaatttttattgtcatcttcttccctcttcttcttc 90  Q
    ||||||||||| |||||| |||||||||||||||   ||| || |||||||||||||||||||| || |||||    
T  43275938 aagcacacatgacataccatggactcacaacatattataacttctattgtcatcttcttccctcctcatcttc 43276010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 90
Target Start/End: Complemental strand, 41867846 - 41867771
Alignment:
Q  15 aaaaagcacacatggcataccgtggactcacaacataagctaatttttattgtcatcttcttccctcttcttcttc 90  Q
    ||||| ||||||| |||||| ||||| |||||||||| | ||| || ||| ||||||||||||||||||| |||||    
T  41867846 aaaaaacacacattgcatacagtggattcacaacataggataacttctatggtcatcttcttccctcttcgtcttc 41867771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 27750552 - 27750516
Alignment:
Q  15 aaaaagcacacatggcataccgtggactcacaacata 51  Q
    |||||||||||||| ||||||||||||||||||||||    
T  27750552 aaaaagcacacatgacataccgtggactcacaacata 27750516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 43277852 - 43277816
Alignment:
Q  15 aaaaagcacacatggcataccgtggactcacaacata 51  Q
    ||||||||||||||||||||||||| |||| ||||||    
T  43277852 aaaaagcacacatggcataccgtgggctcagaacata 43277816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 5688566 - 5688493
Alignment:
Q  17 aaagcacacatggcataccgtggactcacaacataagctaatttttattgtcatcttcttccctcttcttcttc 90  Q
    |||||||||||||||||| |||||||||||||||| | ||| |||||||||||||||||||||| ||| |||||    
T  5688566 aaagcacacatggcatactgtggactcacaacatatgataacttttattgtcatcttcttccctattcatcttc 5688493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 44126783 - 44126858
Alignment:
Q  15 aaaaagcacacatggcataccgtggactcacaacataagctaatttttattgtcatcttcttccctcttcttcttc 90  Q
    |||||||| |||| | |||| |||||||||||||||| | |||||| ||||||||||||||||||||||| |||||    
T  44126783 aaaaagcatacatcggatactgtggactcacaacatatgataatttatattgtcatcttcttccctcttcatcttc 44126858  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 90
Target Start/End: Complemental strand, 1273364 - 1273289
Alignment:
Q  15 aaaaagcacacatggcataccgtggactcacaacataagctaatttttattgtcatcttcttccctcttcttcttc 90  Q
    ||||||||||||||||||||||||| ||||||||||| | ||| || |||| ||||||| |||||| ||| |||||    
T  1273364 aaaaagcacacatggcataccgtggtctcacaacataggataacttctattatcatcttgttcccttttcatcttc 1273289  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 37559183 - 37559258
Alignment:
Q  15 aaaaagcacacatggcataccgtggactcacaacataagctaatttttattgtcatcttcttccctcttcttcttc 90  Q
    ||||||||||||||||||||||||||||||||||||| | ||| ||  ||  |||||||||||| ||||| |||||    
T  37559183 aaaaagcacacatggcataccgtggactcacaacatatgataacttccatcttcatcttcttccatcttcatcttc 37559258  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 33377295 - 33377245
Alignment:
Q  15 aaaaagcacacatggcataccgtggactcacaacataagctaatttttatt 65  Q
    ||||||||||||||||||||||||||||||||||||| | ||||| |||||    
T  33377295 aaaaagcacacatggcataccgtggactcacaacatatgataattcttatt 33377245  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 55952995 - 55953067
Alignment:
Q  18 aagcacacatggcataccgtggactcacaacataagctaatttttattgtcatcttcttccctcttcttcttc 90  Q
    ||||||||||| ||||||||| ||||||||||||   ||| || |||||||||||||||||||| || |||||    
T  55952995 aagcacacatgacataccgtgaactcacaacatattataacttctattgtcatcttcttccctcctcatcttc 55953067  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 55953783 - 55953747
Alignment:
Q  15 aaaaagcacacatggcataccgtggactcacaacata 51  Q
    ||||||||||||||||||||||||| |||||||||||    
T  55953783 aaaaagcacacatggcataccgtgggctcacaacata 55953747  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 48
Target Start/End: Complemental strand, 37560231 - 37560198
Alignment:
Q  15 aaaaagcacacatggcataccgtggactcacaac 48  Q
    ||||| ||||||||||||||||||||||||||||    
T  37560231 aaaaaacacacatggcataccgtggactcacaac 37560198  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 26788707 - 26788739
Alignment:
Q  15 aaaaagcacacatggcataccgtggactcacaa 47  Q
    |||||||||||||| ||||||||||||||||||    
T  26788707 aaaaagcacacatgacataccgtggactcacaa 26788739  T

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Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 46673676 - 46673749
Alignment:
Q  17 aaagcacacatggcataccgtggactcacaacataagctaatttttattgtcatcttcttccctcttcttcttc 90  Q
    |||||| ||||||||||| |||||||||||||||| | ||| ||||||| |||||||||||||||||| |||||    
T  46673676 aaagcatacatggcatactgtggactcacaacatatgataacttttattatcatcttcttccctcttcatcttc 46673749  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 22746248 - 22746184
Alignment:
Q  18 aagcacacatggcataccgtggactcacaacataagctaatttttattgtcatcttcttccctct 82  Q
    |||||||||| ||||||||||||||||||||||| | ||| || |||||||||||||||||||||    
T  22746248 aagcacacatagcataccgtggactcacaacatacgataacttctattgtcatcttcttccctct 22746184  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 90
Target Start/End: Complemental strand, 22061726 - 22061651
Alignment:
Q  15 aaaaagcacacatggcataccgtggactcacaacataagctaatttttattgtcatcttcttccctcttcttcttc 90  Q
    |||||||||||||| |||| ||||||||| ||||||| | ||| |  ||||||||||||||||||||||| |||||    
T  22061726 aaaaagcacacatgacatatcgtggactcgcaacatatgataactcctattgtcatcttcttccctcttcatcttc 22061651  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 7146964 - 7147038
Alignment:
Q  15 aaaaagcacacatggcataccgtggactcacaacataagctaatttttattgtcatcttcttccctcttcttctt 89  Q
    ||||||||||||| ||||||| || ||| ||||||||   ||| || ||||||||||||||||||||||| ||||    
T  7146964 aaaaagcacacatagcataccatgaacttacaacatataataacttctattgtcatcttcttccctcttcatctt 7147038  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 7147978 - 7147925
Alignment:
Q  29 gcataccgtggactcacaacataagctaatttttattgtcatcttcttccctct 82  Q
    ||||||||||||||||||||||| | ||| || ||| |||||||||||||||||    
T  7147978 gcataccgtggactcacaacatatgataacttctatggtcatcttcttccctct 7147925  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 22060648 - 22060724
Alignment:
Q  15 aaaaagcacacatggcataccgtg-gactcacaacataagctaatttttattgtcatcttcttccctcttcttcttc 90  Q
    |||||||||||||| ||||||||  |||| |||||||| | ||| || ||||||||||||||||| ||||| |||||    
T  22060648 aaaaagcacacatgacataccgtatgacttacaacatatgataacttctattgtcatcttcttccttcttcatcttc 22060724  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 22744934 - 22745006
Alignment:
Q  18 aagcacacatggcataccgtggactcacaacataagctaatttttattgtcatcttcttccctcttcttcttc 90  Q
    ||||| ||||||||||| ||| ||||||||||||   ||| || ||||||||||||||||||| ||| |||||    
T  22744934 aagcatacatggcatacggtgtactcacaacatactataacttctattgtcatcttcttcccttttcatcttc 22745006  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 114
Target Start/End: Original strand, 1970993 - 1971092
Alignment:
Q  15 aaaaagcacacatggcataccgtggactcacaacataagctaatttttattgtcatcttcttccctcttcttcttctaacttcatacccaaaacaaaaaa 114  Q
    |||||||||||||| |||||| || ||| | ||| || | ||| || |||  |||||| ||| ||||||| ||||| ||||||||||| |||||||||||    
T  1970993 aaaaagcacacatgacataccatgaactaataacttatgataaattctataatcatctcctttcctcttcatcttccaacttcatacctaaaacaaaaaa 1971092  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 8412244 - 8412180
Alignment:
Q  18 aagcacacatggcataccgtggactcacaacataagctaatttttattgtcatcttcttccctct 82  Q
    |||||||||| ||||||||| ||||||||||||| | ||| || |||||||||||||||||||||    
T  8412244 aagcacacatagcataccgtagactcacaacatacgataacttctattgtcatcttcttccctct 8412180  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 8411274 - 8411346
Alignment:
Q  18 aagcacacatggcataccgtggactcacaacataagctaatttttattgtcatcttcttccctcttcttcttc 90  Q
    ||||| ||||| ||||| ||| ||||||||||||   ||| || ||||||||||||||||||| ||| |||||    
T  8411274 aagcatacatgacatacggtgtactcacaacatactataacttctattgtcatcttcttcccttttcatcttc 8411346  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 111
Target Start/End: Original strand, 9101615 - 9101659
Alignment:
Q  67 tcatcttcttccctcttcttcttctaacttcatacccaaaacaaa 111  Q
    ||||||||||||||| || ||| | ||||||||||||||||||||    
T  9101615 tcatcttcttccctcatcatctcccaacttcatacccaaaacaaa 9101659  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 26404134 - 26404072
Alignment:
Q  22 acacatggcataccgtggactcacaacataagctaatttttattgtcatcttcttccctcttc 84  Q
    ||||||||||||||||||||||| |||| | | ||||||  ||||||||||||||||||||||    
T  26404134 acacatggcataccgtggactcataacacatgataatttccattgtcatcttcttccctcttc 26404072  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 90
Target Start/End: Complemental strand, 19569557 - 19569482
Alignment:
Q  15 aaaaagcacacatggcataccgtggactcacaacataagctaatttttattgtcatcttcttccctcttcttcttc 90  Q
    |||||| |||||||||||||||||||||||||||||| | ||| ||  ||  |||||||||||| ||||| |||||    
T  19569557 aaaaagaacacatggcataccgtggactcacaacatatgataacttccatcttcatcttcttccatcttcatcttc 19569482  T

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Target: scaffold0369 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 13092 - 13181
Alignment:
Q  18 aagcacacatggcataccgtggactcacaacataagctaatttttattgtcatcttcttccctcttcttcttctaacttcatacccaaaa 107  Q
    ||||| ||||||||||| ||||||||| |||| | | ||| || ||||||||| | | ||||||||| ||||  ||||||||||| ||||    
T  13092 aagcagacatggcatactgtggactcaaaacaaatgataacttctattgtcatttccatccctcttcatctttcaacttcataccaaaaa 13181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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