View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3857_low_22 (Length: 404)
Name: NF3857_low_22
Description: NF3857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3857_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 17 - 394
Target Start/End: Original strand, 31045570 - 31045958
Alignment:
| Q |
17 |
actattctcatcctttccataatcacctgaaccaaattgtataacagaaccacccaactaattattatctacaataagagcattcccaatgcataaatgg |
116 |
Q |
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| T |
31045570 |
actattctcatcctttccataatcacctgaaccaaattgtataacagaaccacccaactaattattatctacaataagagcattcccaatgcataaatgg |
31045669 |
T |
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| Q |
117 |
gcaggttttggatgatgaaaacagagtttgacttagtaacacactagtgttaacccttaaagaaaatcaaacttgtactaactaacatagctttcat--- |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31045670 |
gcaggttttggatgatgaaaacagagtttgacttagtaacacactagtgttaacccttaaagaaaatcaaacttgtactaactaacatagctttcataga |
31045769 |
T |
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| Q |
214 |
--------agagaaacctcaagcataactcattcagggtccatcattcctgtcatccacaaactctcccaccacatgggtgcctgaatgagtcacatgtc |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31045770 |
gatccataagagaaacctcaagcataactcattcagggtccatcattcctgtcatccacaaactctcccaccacatgggtgcctgaatgagtcacatgtc |
31045869 |
T |
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| Q |
306 |
acatgttatgctaaatctaaatgagaatctgagatgatagcaatctttaactcaaaagcctgtctttagaacctatggccacaattcat |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31045870 |
acatgttatgctaaatctaaatgagaatctgagatgatagcaatctttaactcaaaagcctgtctttagaacctatggccacaattcat |
31045958 |
T |
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