View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3857_low_23 (Length: 401)
Name: NF3857_low_23
Description: NF3857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3857_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 11 - 387
Target Start/End: Complemental strand, 20898677 - 20898301
Alignment:
| Q |
11 |
cacagatgcatcaatatcccaaccagcagatctcatttcataaaccaacaacttcacaaagcttcgaattgatttaaccgtgtggtgaagtgcagatata |
110 |
Q |
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| T |
20898677 |
cacagatgcatcaatatcccaaccagcagatctcatttcataaaccaacaacttcacaaagcttcgaattgatttaaccgtgtggtgaagtgcagatata |
20898578 |
T |
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| Q |
111 |
aaatgtttaggacttagtcctgagatgtgtagattatcaagagatgataatgagccactttgatttaacctcctttcaattaacttgttctgtttatttg |
210 |
Q |
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| T |
20898577 |
aaatgtgtaggacttagtcctgagatgtgtagattatcaagagatgataatgaaccactttgatttaacctcctttcaattaacttgttctgtttatttg |
20898478 |
T |
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| Q |
211 |
cctcctctaacttctctttaagaaacattatctcagaatccttaagaagcgacttcgattctaacttcttacccacgattttatgggttaatatattact |
310 |
Q |
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| T |
20898477 |
cctcctctaacttctctttaagaaacattatctcagaatccttaagaagcgacttcgattctaacttcttccccacgattttatgggttattatattact |
20898378 |
T |
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| Q |
311 |
cttcagctcctttaattcggctgcaacaattgctccctccggtgaaggattgaaattgaattgttttttgaaccaac |
387 |
Q |
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| T |
20898377 |
cttcagctcctttaattcggctgcaacaattgctacctccggtgaaggatcaaaattgaattgttttttgaaccaac |
20898301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 330 - 387
Target Start/End: Complemental strand, 23572937 - 23572880
Alignment:
| Q |
330 |
gctgcaacaattgctccctccggtgaaggattgaaattgaattgttttttgaaccaac |
387 |
Q |
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| T |
23572937 |
gctgcaacaattgttccatccggtgaagggtcgaaattgaattgttttttgaaccaac |
23572880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 155 - 250
Target Start/End: Complemental strand, 31766516 - 31766421
Alignment:
| Q |
155 |
tgataatgagccactttgatttaacctcctttcaattaacttgttctgtttatttgcctcctctaacttctctttaagaaacattatctcagaatc |
250 |
Q |
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| T |
31766516 |
tgataatgttccactttgattcaatctcttctcaattaacttgttatgaccattagcttccactaatttctctttaagaaacataatctctgaatc |
31766421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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