View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3857_low_25 (Length: 383)
Name: NF3857_low_25
Description: NF3857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3857_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 19 - 358
Target Start/End: Original strand, 55870870 - 55871209
Alignment:
| Q |
19 |
tttccaaggttgcaaactgttttgaacaagtgattttgcaaccacagaagcagcaagcaaattgtctgaagcaagaataaagtggaagtaagaattgtca |
118 |
Q |
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| T |
55870870 |
tttccaaggttgcaaactgttttgaacaagtgattttgcaaccacagaagcagcaagcacattgtctgaagcaagaacaaagtggaagtaagaattgtca |
55870969 |
T |
|
| Q |
119 |
accagagcaggaacaaggtctgcagatggtagccgaaggcgtgctgctgcattgttggtgtgctcatttgccagcgtcaagtcaagacaatgaagctgtt |
218 |
Q |
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| T |
55870970 |
accagagcaggaacaaggtctgcagatggtagccgaaggcgtgctgctgcattgttggcgtgctcatttgccagcgtcaagtcaagacaatgaagctgtt |
55871069 |
T |
|
| Q |
219 |
ccggtatgctattcgatgctacatgacgataaaaatattcatgtattttcgctgtcctaaaactttgttccgtagaggttacctaagaaaatgatcaaca |
318 |
Q |
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| T |
55871070 |
ccggtatgctattcgatgctacatgacgataaaaatattcatgtattttcgctgtcctaaaactttgttccgtagaggttacctaagaaaatgatcaaca |
55871169 |
T |
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| Q |
319 |
taaagtaatgagatttgaactttgaaaactttttgtcttt |
358 |
Q |
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| T |
55871170 |
taatgtaatgagatttgaactttgaaaactttttgtcttt |
55871209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 25 - 258
Target Start/End: Complemental strand, 24888708 - 24888470
Alignment:
| Q |
25 |
aggttgcaaactgttttgaacaagtgattttgcaaccacagaagcagcaagcaaattgtctgaagcaagaataaagtggaagtaagaatt------gtca |
118 |
Q |
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| T |
24888708 |
aggttgcaaactgttgtgaacaagtgattttgcaaccatatatgtggcaagcacatggtctgaggcaagaacaaagtgaaa-taagaattaatattgtca |
24888610 |
T |
|
| Q |
119 |
accagagcaggaacaaggtctgcagatggtagccgaaggcgtgctgctgcattgttggtgtgctcatttgccagcgtcaagtcaagacaatgaagctgtt |
218 |
Q |
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||||||||| |||||| |||||||||||| || ||||||| | ||||||||| | ||||||||||| |||||| |||||||| || ||||||| |||| |
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| T |
24888609 |
accagagcaagaacaaattctgcagatggttgctgaaggcgcacagctgcattggttgtgtgctcattcgccagcctcaagtcacgataatgaagttgtt |
24888510 |
T |
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| Q |
219 |
ccggtatgctattcgatgctacatgacgataaaaatattc |
258 |
Q |
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| T |
24888509 |
tcggtatgctgctcgatgctacttgacaaaataaatattc |
24888470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 42 - 249
Target Start/End: Original strand, 34675333 - 34675540
Alignment:
| Q |
42 |
gaacaagtgattttgcaaccacagaagcagcaagcaaattgtctgaagcaagaataaagtggaagtaagaattgtcaaccagagcaggaacaaggtctgc |
141 |
Q |
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|||| |||||| ||||||| || || |||||||||| ||| ||||| || | || ||| ||| | || ||||||||||| || |||||||| || || || |
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| T |
34675333 |
gaacgagtgatgttgcaacaaccgaggcagcaagcacattatctgaggctaaaacaaaatggtaataggaattgtcaacaagggcaggaactagttccgc |
34675432 |
T |
|
| Q |
142 |
agatggtagccgaaggcgtgctgctgcattgttggtgtgctcatttgccagcgtcaagtcaagacaatgaagctgttccggtatgctattcgatgctaca |
241 |
Q |
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||| |||||| |||||||||||||||| |||||||| ||||||| ||| | ||||||||||||||||||| |||| ||||||||| | ||||||||| |
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| T |
34675433 |
agacggtagctgaaggcgtgctgctgcgttgttggtatgctcatgtgctaatctcaagtcaagacaatgaagttgtttcggtatgctgcttgatgctaca |
34675532 |
T |
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| Q |
242 |
tgacgata |
249 |
Q |
| |
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|| ||||| |
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| T |
34675533 |
tggcgata |
34675540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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