View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3857_low_3 (Length: 749)
Name: NF3857_low_3
Description: NF3857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3857_low_3 |
 | |
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| [»] scaffold0499 (2 HSPs) |
| | |
|
| [»] scaffold0025 (1 HSPs) |
| | |
|
| [»] scaffold1889 (1 HSPs) |
| | |
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Alignment Details
Target: chr6 (Bit Score: 499; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 11 - 566
Target Start/End: Original strand, 13100227 - 13100783
Alignment:
| Q |
11 |
atcatcaaccttttgtatatttcgaagcctggttatattttcccaatggtttgttttaggcgatgtccaagataaatacttttcgagtgtgatttctttg |
110 |
Q |
| |
|
|||||||| |||||||||||||| |||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13100227 |
atcatcaatcttttgtatatttcaaagcctagttatatttttccaatggtttgttttgggcgatgtccaagataaatacttttcgagtgtgatttctttg |
13100326 |
T |
|
| Q |
111 |
attaaacatgaatcaaagaagacaaaatttgtccttttgagaaggtatgcacaatattattatagtttattttcaatgaatttgttttgctttttggatt |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13100327 |
attaaacatgaatcaaagaagacaaaatttgtctttttgtgaaggtatgcacaatattattatagtttattttcaatgaatttgttttgctttttggatt |
13100426 |
T |
|
| Q |
211 |
gctatcaaaagaattattattaattctgaattaatatttttatttactctcaaacaattatgtaagaaatcaatatctttttaaaaa--gtactaatttg |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
13100427 |
gctatcaaaagaattattattaattctgaattaatatttt-atttactctcaaacaagtatgtaagaaatcaatatctttttaaaaaatgtactaatttg |
13100525 |
T |
|
| Q |
309 |
aattttgatttttaatgtgttctcgtatgaacaaaatcaacctaaattgttaaaatttttgcatatcgattcctaatcaatttttatatctaaatccctt |
408 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13100526 |
aattttgatttttgatgtgttctcgtatgaacaaaatcaacctaaattgttaaaaattttgcatatcgattcctaatcaatttttatatctaaatccctt |
13100625 |
T |
|
| Q |
409 |
ttatcaatttttgtaccgaaattgtatgctcatcaattcaaattttctagaacttaataaaaattgttaatttttaaaagaaatgtcaattgttaatgat |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13100626 |
ttatcaatttttgtaccgaaattgtatgctcatcaattcaaattttctagaacttaataaaaattgttaatttttaaaagaaatgtcaattgttaatgat |
13100725 |
T |
|
| Q |
509 |
ataataagcatagatcaaacaattagaaatatatttagggttaatagtactttacctc |
566 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13100726 |
ataataagcatagatcaaacaattagaaatatatttagggttaatagtactttacctc |
13100783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 11 - 363
Target Start/End: Original strand, 13110046 - 13110407
Alignment:
| Q |
11 |
atcatcaaccttttgtatatttcgaagcctggttat-attttcccaatggtttgttttaggcgatgtccaagataaatacttttcgagtgtgatttcttt |
109 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||| |||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
13110046 |
atcatcaatcttttgtatatttcgaagcctagttatgattttcccaaaggtttgtttt-ggcgatgtccaagataaatctctttcgagtgtgatttcttt |
13110144 |
T |
|
| Q |
110 |
gattaaa----catgaatcaaagaagacaaaatttgtccttttgagaaggtatgcacaatattattatagtttattttcaatgaatttgttttgcttttt |
205 |
Q |
| |
|
||||||| | |||| ||||||||||| |||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13110145 |
gattaaattaacttgaaacaaagaagacacaatttgtcttttggacaaggtatgcacaatattattatagtttattttcaatgaatttgttttgcttttt |
13110244 |
T |
|
| Q |
206 |
ggattgctatcaaaagaattattattaattctgaattaatatttttatttactctcaaacaattat-gtaagaaatcaatatctttttaaaa-----agt |
299 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| || ||| || ||||||||||||| ||| ||| ||||||||||||||||||||||||| | | |
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|
| T |
13110245 |
ggattcctatcaaaagaattattattaattctgattttata-ttatatttactctcaatcaagtatcgtaagaaatcaatatctttttaaaagtatgaat |
13110343 |
T |
|
| Q |
300 |
actaatttgaattttgatttttaatgtgttctcgtatgaacaaaatcaacctaaattgttaaaa |
363 |
Q |
| |
|
|||||||| |||| |||||| | || ||| ||||||||||||||||||||| ||||||||| |
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|
| T |
13110344 |
tataatttgagtttttatttttgacgtactcttgtatgaacaaaatcaacctaatttgttaaaa |
13110407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 618 - 733
Target Start/End: Original strand, 13100835 - 13100952
Alignment:
| Q |
618 |
ggaatacccctcaaaaaccttcttctttt--ttcttcagaagtttgctttgaaagcccataatttatttccttcccttgacgtgtatatttctgccgaga |
715 |
Q |
| |
|
||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13100835 |
ggaatacccctcaaaaaccttttttttttttttcttcagaagtttgctttgaaagcccataatttatttccttcccttgacgtgtatatttctgccgaga |
13100934 |
T |
|
| Q |
716 |
ataaagtaaaaggagaag |
733 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
13100935 |
ataaagtaaaaggagaag |
13100952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 195 - 267
Target Start/End: Complemental strand, 13149773 - 13149702
Alignment:
| Q |
195 |
ttttgctttttggattgctatcaaaagaattattattaattctgaattaatatttttatttactctcaaacaa |
267 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| ||| ||| |||||| ||||||||||||| |||||| |
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|
| T |
13149773 |
ttttgctttttggattgatatcaaaagaattattatttattttgacttaata-ttttatttactcttaaacaa |
13149702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 653 - 695
Target Start/End: Complemental strand, 20549461 - 20549419
Alignment:
| Q |
653 |
agaagtttgctttgaaagcccataatttatttccttcccttga |
695 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
20549461 |
agaagtttgctttgaaagcgcataatttatttccttcccttga |
20549419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 267
Target Start/End: Complemental strand, 9945149 - 9945051
Alignment:
| Q |
167 |
ttattatagtttattttcaatgaatttgttttgctttttggattgctatcaaaagaattattattaattctgaattaatatttttatttactctcaaaca |
266 |
Q |
| |
|
||||||||| ||||||| ||| ||||| ||| | ||||||||||| |||||||| ||||||||| ||| | | |||||| ||||||||||||||||||| |
|
|
| T |
9945149 |
ttattatagcttattttgaattaatttcttt-gttttttggattgatatcaaaaatattattatttatttttacttaata-ttttatttactctcaaaca |
9945052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 694 - 734
Target Start/End: Complemental strand, 20549390 - 20549350
Alignment:
| Q |
694 |
gacgtgtatatttctgccgagaataaagtaaaaggagaagt |
734 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
20549390 |
gacgtgtatatttctgctgagaacaaagtaaaaggagaagt |
20549350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 264
Target Start/End: Original strand, 13171416 - 13171484
Alignment:
| Q |
195 |
ttttgctttttggattgctatcaaaagaattattattaattctgaattaatatttttatttactctcaaa |
264 |
Q |
| |
|
||||| ||||||||||| |||||||| || ||||||| ||| | | |||||| ||||||||||||||||| |
|
|
| T |
13171416 |
ttttgttttttggattgatatcaaaataaatattatttattttaacttaata-ttttatttactctcaaa |
13171484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0499 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: scaffold0499
Description:
Target: scaffold0499; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 11 - 566
Target Start/End: Complemental strand, 4932 - 4372
Alignment:
| Q |
11 |
atcatcaaccttttgtatatttcgaagcctggttatattttcccaatggtttgttttaggcgatgtccaagataaatacttttcgagtgtgatttctttg |
110 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||| ||||||||| |||| |||||| ||||||||| |
|
|
| T |
4932 |
atcatcaatcttttgtatatttcgaagcctagttatattttcccaatgacgtgtttt-ggcgatgtcgaagataaatcttttttgagtgtaatttctttg |
4834 |
T |
|
| Q |
111 |
attaaacatgaatcaaagaagacaaaatttgtccttttgagaaggtatgcacaatattattatagtttattttcaatgaatttgttttgctttttggatt |
210 |
Q |
| |
|
||||||| |||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4833 |
attaaacttgaaacaaagaagacaaaatttgtctttttgagaaggtatgcacaattttattatagtttattttcaatgaatttgttttgctttttggatt |
4734 |
T |
|
| Q |
211 |
gctatcaaaagaattattattaattctgaattaatatttttatttactctcaaacaattat-gtaagaaatcaatatctttttaaaaagtactaatt--- |
306 |
Q |
| |
|
||||||||| ||| |||||||||||||| |||||||||| ||||||||| |||||| || |||||| |||||||||||||| ||||||||||||| |
|
|
| T |
4733 |
actatcaaaataataattattaattctgatttaatatttt-atttactctaaaacaagcatagtaagatatcaatatcttttttaaaagtactaattata |
4635 |
T |
|
| Q |
307 |
---tgaattttgatttttaatgtgttctcgtatgaacaaaatcaacctaaattgttaaaatttttgcatatcgattcctaatcaatttttatatctaaat |
403 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4634 |
atttgaattttgatttttgatgtgttctcgtatgaacaaaatcaacctaaattgttaaaaattttgcatatcgattcctaatcaatttttatatctaaat |
4535 |
T |
|
| Q |
404 |
cccttttatcaatttttgtaccgaaattgtatgctcatcaattcaaattttctagaacttaataaaaattgttaatttttaaaagaaatgtcaattgtta |
503 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4534 |
cccttttatcaatttttgtactaaaattgtatgctcatcaattcaaattttctagaactttataaaaattgttaatttttaaaagaaatgtcaattgtta |
4435 |
T |
|
| Q |
504 |
atgatataataagcatagatcaaacaattagaaatatatttagggttaatagtactttacctc |
566 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
4434 |
atgatataataagcatggatcaaacaattagaaatatatttagagttaatagtgctttacctc |
4372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0499; HSP #2
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 643 - 733
Target Start/End: Complemental strand, 4304 - 4212
Alignment:
| Q |
643 |
ttttttcttcagaagtttgctttgaaagcccataatttatttccttcccttgacgtgtatatttctgccga--gaataaagtaaaaggagaag |
733 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
4304 |
ttttttcttcagaagtttgctttgaaagcccataatttatttccatcccctggcgtgtatatttcggccgatcgaataaagtaaaaggagaag |
4212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025 (Bit Score: 167; Significance: 5e-89; HSPs: 1)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 11 - 363
Target Start/End: Complemental strand, 152944 - 152584
Alignment:
| Q |
11 |
atcatcaaccttttgtatatttcgaagcctggttat-attttcccaatggtttgttttaggcgatgtccaagataaatacttttcgagtgtgatttcttt |
109 |
Q |
| |
|
||||| || |||||||||||||||||| || ||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
152944 |
atcattaatcttttgtatatttcgaagtctagttatgattttcccaatggtttgtttt-ggcgatgtccaagataaatctctttcgagtgtgatttcttt |
152846 |
T |
|
| Q |
110 |
gattaaaca----tgaatcaaagaagacaaaatttgtccttttgagaaggtatgcacaatattattatagtttattttcaatgaatttgttttgcttttt |
205 |
Q |
| |
|
|||||||| |||| |||||| |||| |||||||| ||| || ||||||||||||||||||||||| |||||||||||||||||| |||||| |||| |
|
|
| T |
152845 |
gattaaactaacttgaaacaaagatgacacaatttgtcttttggacaaggtatgcacaatattattatattttattttcaatgaatttcttttgcgtttt |
152746 |
T |
|
| Q |
206 |
ggattgctatcaaaagaattattattaattctgaattaatatttttatttactctcaaacaattat-gtaagaaatcaatatctttttaaaaagtacta- |
303 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| || ||||| | |||| || |||| ||| ||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
152745 |
ggattcctatcaaaagaattattattaattctgattttatattat-attttctatcaatcaagtatcgtaagaaatcaatatctttttaaaa-gtactat |
152648 |
T |
|
| Q |
304 |
----atttgaattttgatttttaatgtgttctcgtatgaacaaaatcaacctaaattgttaaaa |
363 |
Q |
| |
|
|||||||||||||||||| | ||| ||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
152647 |
tataatttgaattttgatttttgacgtgctcttgtatgaacaaaatcaacctaatttgttaaaa |
152584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1889 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold1889
Description:
Target: scaffold1889; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 292
Target Start/End: Original strand, 62 - 256
Alignment:
| Q |
92 |
ttcgagtgtgatttctttgattaaacatgaatcaaagaagacaaaa-tttgtccttttg-agaaggtatgcacaata-ttattatagtttattttcaatg |
188 |
Q |
| |
|
|||||||||||||||||||||||||| || | |||| ||||||||| |||||| ||||| ||||||||||| | || ||||||||| |||||| || |
|
|
| T |
62 |
ttcgagtgtgatttctttgattaaacctggaacaaaaaagacaaaattttgtctttttgaagaaggtatgcctattatttattatagcttattt----tg |
157 |
T |
|
| Q |
189 |
aatttgttttgctttttggattgctatcaaaagaattattattaattctgaattaatatttttatttactctcaaacaatta-tgtaagaaatcaatatc |
287 |
Q |
| |
|
| ||| |||| ||||| ||| |||||||||| |||||||| ||| ||| |||||| | |||||||||||||||||| || |||||||||||||| |
|
|
| T |
158 |
attttttttt--ttttt---ttgatatcaaaagatttattatttattttgacttaata-tcttatttactctcaaacaagtaccataagaaatcaatata |
251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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