View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3857_low_30 (Length: 350)
Name: NF3857_low_30
Description: NF3857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3857_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 54878193 - 54878525
Alignment:
| Q |
1 |
taagccaatatgaatcaaaccaacccttttatcccattttcagttttcttcatcttccatttccatcatcaccatggaagctactgcaactctactcagc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54878193 |
taagccaatatgaatcaaaccaacccttttatcccattttcagttttcttcatcttccatttccatcatcaccatggaagctactgcaactctactcagc |
54878292 |
T |
|
| Q |
101 |
ttctctcttccatccaccaaaacccaatcttttcaaatcctaacccgacccattaacccattcaacccacccacatcatacaaacatagacccatttcca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54878293 |
ttctctcttccatccaccaaaacccaatcttttcaaatcctaacccgacccattaacccattcaacccacccacatcatacaaacatagacccatttcca |
54878392 |
T |
|
| Q |
201 |
aaacccaccgtttatccatcaacgccgcaatttcacgcacaaagaaagaagaaacagttgaaaccgtaaaagaacaacttgaaaactgttacctcctcgc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54878393 |
aaacccaccgtttatccatcaacgccgcaatttcacgcacaaagaaagaagaaacagttgaaaccgtaaaagaacaacttgaaaactgttacctcctcgc |
54878492 |
T |
|
| Q |
301 |
cggaatcaactacaaaggcttcaccgtaaaaca |
333 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
54878493 |
cggaatcaactacaaaggcttcaccgtaaaaca |
54878525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 257 - 333
Target Start/End: Complemental strand, 56015582 - 56015506
Alignment:
| Q |
257 |
gttgaaaccgtaaaagaacaacttgaaaactgttacctcctcgccggaatcaactacaaaggcttcaccgtaaaaca |
333 |
Q |
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| T |
56015582 |
gttgaaaccgtaaaagaacaacttgaaaattgttaccttctcgccgaaatcaactacaaaggcttcaccgtgaaaca |
56015506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 257 - 333
Target Start/End: Original strand, 23273345 - 23273421
Alignment:
| Q |
257 |
gttgaaaccgtaaaagaacaacttgaaaactgttacctcctcgccggaatcaactacaaaggcttcaccgtaaaaca |
333 |
Q |
| |
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||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
23273345 |
gttgaaaccaaaaaagaacagcttgaaaactgttaccttctcgccggaatcaactacaaaggcttcaccgtgaaaca |
23273421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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