View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3857_low_32 (Length: 345)
Name: NF3857_low_32
Description: NF3857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3857_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 153 - 332
Target Start/End: Original strand, 43226208 - 43226374
Alignment:
| Q |
153 |
atattcctttggttttgaccaaaaacataacaactctcgaattacctcttttgatggagaagaagctaccccgcttattcaaaacaaagaccgaacatgg |
252 |
Q |
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| T |
43226208 |
atattcctttggttttgaccaaaaatataacaactctcaaattacctcttttgatggagaagaagctaccccgcttattcaaaacaaagaccgaacatgg |
43226307 |
T |
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| Q |
253 |
cactcatagttttcttaatacttattctaaagaacagtgtttcctgagagaataacagctctgcgcaaaacagaggaaaa |
332 |
Q |
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| T |
43226308 |
cactcatagttttctt-------------aagaacagtgttttatgagagaataacagctctgcgcaaaacagaggaaaa |
43226374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 185 - 293
Target Start/End: Original strand, 43242008 - 43242116
Alignment:
| Q |
185 |
actctcgaattacctcttttgatggagaagaagctaccccgcttattcaaaacaaagaccgaacatggcactcatagttttcttaatacttattctaaag |
284 |
Q |
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| T |
43242008 |
actctcaaattacctcttttgatgcagaagaagctatcccgcttattcaaaacaaagaccggacatgacatccataattttcttattacttattctaaag |
43242107 |
T |
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| Q |
285 |
aacagtgtt |
293 |
Q |
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|||| |||| |
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| T |
43242108 |
aacaatgtt |
43242116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 95 - 154
Target Start/End: Original strand, 43226065 - 43226124
Alignment:
| Q |
95 |
ctagtacaagtgtttcgtatctaaatcaaattatgaaaccactaatttaaaggtaaggat |
154 |
Q |
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| T |
43226065 |
ctagtaaaagtgtttcgtatctaaatcaaattatgaaagcactaaattaaaggtaaggat |
43226124 |
T |
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