View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3857_low_35 (Length: 334)
Name: NF3857_low_35
Description: NF3857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3857_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 258
Target Start/End: Original strand, 41089423 - 41089663
Alignment:
| Q |
18 |
aaatacacctcacttataggaggaggaacctcctcaatccagaccttatttggatctgaaagagctaaatgggccagcttatgacctactaagttgttat |
117 |
Q |
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| T |
41089423 |
aaatacacctcacttataggaggaggaacctcctcaatccggaccttatttggatccgaaagagctaaatgggccagcttatgacctactaagttgttat |
41089522 |
T |
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| Q |
118 |
ctctatgggtaaaatgaaaatgacaattgtcaaagtaagatttggttctttggatttcttggatgacactgcctaaataagatctattttccttattttc |
217 |
Q |
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| T |
41089523 |
ctctatgggtaaaatgaaaatgacaattgtcaaagtaagatttggttctctggatttcttggatgacactacctaaataagatctattttccttattttc |
41089622 |
T |
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| Q |
218 |
atagcaagccatattccagatccgttcattgttgccttcaa |
258 |
Q |
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| T |
41089623 |
atagcaagccatattccagattcgttcattgtcgccttcaa |
41089663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 212 - 321
Target Start/End: Original strand, 41089663 - 41089772
Alignment:
| Q |
212 |
attttcatagcaagccatattccagatccgttcattgttgccttcaaaaatcacttctctgaaaccacagtctcgagccaacctcatagtgagtaataaa |
311 |
Q |
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| T |
41089663 |
attttcatagcaagccatattccagattcgttcattgtcgccttcaaaaatcacttctctgaaaccacagtctcgagccaacctcatagtgagtaataag |
41089762 |
T |
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| Q |
312 |
ccatatgcct |
321 |
Q |
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| T |
41089763 |
ccatatgcct |
41089772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 34010853 - 34010797
Alignment:
| Q |
45 |
acctcctcaatccagaccttatttggatctgaaagagctaaatgggccagcttatga |
101 |
Q |
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| T |
34010853 |
acctcctctatccacaccctatttgggtcagaaagaactaaatgggccagctgatga |
34010797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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