View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3857_low_4 (Length: 741)
Name: NF3857_low_4
Description: NF3857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3857_low_4 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 3e-96; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 12 - 234
Target Start/End: Original strand, 32099487 - 32099711
Alignment:
| Q |
12 |
aaagggagacagaaggttacgctagtcgctaattggaattgttcaaggcaacacatttgataaattatatttgacagctttcaataaactactatatatt |
111 |
Q |
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| T |
32099487 |
aaagggagacagaaggttacgctagtcgctaataggaattgttcaaggcaacacatttgataaattatatttgacagctttcaataaactactatatatt |
32099586 |
T |
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| Q |
112 |
ctgcatggctgccactatgttgggaaaatactacatttgattgccggagccatagtcaccc--nnnnnnnnnttataatttagtacatacatatatattg |
209 |
Q |
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| T |
32099587 |
ctgcatggctgccactatgttgggaaaatactacatctgattgccggagccatagtcacccaaaaaaaaaaattataatttagtacatacatatatattg |
32099686 |
T |
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| Q |
210 |
tgatcatctattaattaactaagtg |
234 |
Q |
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| T |
32099687 |
tgatcatctattaattaactaagtg |
32099711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 366 - 568
Target Start/End: Original strand, 32099703 - 32099910
Alignment:
| Q |
366 |
aactaagtgatgatcatttgctctgaaaa-aataaaactaagtgatgaatcaccttaacaaatgttgtacaacaatatattacatttgcccatagttata |
464 |
Q |
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||||||||||| ||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32099703 |
aactaagtgataatcatttcctctaaaaaaaataaaactaagtgatgaatcaccttaacaaatgttgtacaacaatatattacatttgcccatagttata |
32099802 |
T |
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| Q |
465 |
agtttgttttag-----nnnnnnnttagctcaacatataatcttcgagccaaattaataaatacgnnnnnnncaagtctatatatttcaatccctataac |
559 |
Q |
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| T |
32099803 |
agtttgttttagaaagaaaaaaaattagctcaacatataatcttcgagccaaattaataaatacg-ttttttcaagtctatatatttcaatccctataac |
32099901 |
T |
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| Q |
560 |
ttatctgcg |
568 |
Q |
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|||||||| |
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| T |
32099902 |
atatctgcg |
32099910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 640 - 725
Target Start/End: Original strand, 32099973 - 32100057
Alignment:
| Q |
640 |
ttgttatattgatccgagtgaaactagattcgactccttaatggttgaaagcttgtggatagaaaaaatgttagaaaggtaactag |
725 |
Q |
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| T |
32099973 |
ttgttatattgatccgagtgaaactagattcgactccttaatggttgaaagcctgtggat-gaaaaaatgttagaaaggtaactag |
32100057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 136; Significance: 1e-70; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 227 - 374
Target Start/End: Complemental strand, 37239 - 37092
Alignment:
| Q |
227 |
actaagtgcttgtttggttcaacatccactttgttaatatcacgtctcaatatttattttcctttgatattacgatgctatattttacatcttcaatcta |
326 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
37239 |
actaagtgcttgtttggttcaacatccactttgttaatatcgcgtctcaatacttattttcctttgatattacgatgctatattttacatcttctatcta |
37140 |
T |
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| Q |
327 |
atcgcacgtttaggctcacctactgcgttaacaaacacaaactaagtg |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37139 |
atcgcacgtttaggctcacctactgcgttaacaaacacaaactaagtg |
37092 |
T |
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